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"""
This module will hold generic functions that can operate on a wide-array of
data structures.
"""
from math import ceil
from functools import reduce
from typing import Any, Tuple, Sequence, Optional, Generator
def partition_all(num: int, items: Sequence[Any]) -> Generator:
"""
Given a sequence `items`, return a new sequence of the same type as `items`
with the data partitioned into sections of `n` items per partition.
This is an approximation of clojure's `partition-all` function.
"""
def __compute_start_stop__(acc, iteration):
start = iteration * num
return acc + ((start, start + num),)
iterations = range(ceil(len(items) / num))
for start, stop in reduce(# type: ignore[misc]
__compute_start_stop__, iterations, tuple()):
yield tuple(items[start:stop]) # type: ignore[has-type]
def partition_by(partition_fn, items):
"""
Given a sequence `items`, return a tuple of tuples, each of which contain
the values in `items` partitioned such that the first item in each internal
tuple, when passed to `partition_function` returns True.
This is an approximation of Clojure's `partition-by` function.
"""
def __partitioner__(accumulator, item):
if partition_fn(item):
return accumulator + ((item,),)
return accumulator[:-1] + (accumulator[-1] + (item,),)
return reduce(__partitioner__, items, tuple())
def parse_csv_line(
line: str, delimiter: str = ",",
quoting: Optional[str] = '"') -> Tuple[str, ...]:
"""
Parses a line from a CSV file into a tuple of strings.
This is a migration of the `web.webqtl.utility.webqtlUtil.readLineCSV`
function in GeneNetwork1.
"""
return tuple(
col.strip(f"{quoting} \t\n") for col in line.split(delimiter))
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