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genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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Author
2021-06-20
merge main
Alexander Kabui
2021-06-20
make requested changes to biweight
Alexander Kabui
2021-06-18
Fixed another error where test_generate_rqtl_command didn't include the filen...
zsloan
2021-06-18
Fixed file type from json to csv for test_generate_rqtl_command
zsloan
2021-06-18
Fixed test_rqtl.py to include Rscript in the command
zsloan
2021-06-18
Fixed test_compose_rqtl_command test; forgot to include Rscript in the command
zsloan
2021-06-18
Change test_compose_rqtl_command in test_commands.py to have different argume...
...
Changed some parameters in test_compose_rqtl_cmd to avoid pylint complaining about duplicate code
zsloan
2021-06-18
db: test_db: Add extra variable in test data for "id"
BonfaceKilz
2021-06-18
Rename json_data column to json_diff_data
BonfaceKilz
2021-06-18
tests: test_db: Add a test-case for fetchall
BonfaceKilz
2021-06-18
tests: test_db: Rename TestPhenotype
BonfaceKilz
2021-06-18
tests: test_phenotype: Rename to test_db
BonfaceKilz
2021-06-18
Use prepared statements for FETCH sql function
BonfaceKilz
2021-06-18
Use prepared statements for UPDATE sql function
BonfaceKilz
2021-06-18
tests: test_audit: Update test case to check for prepared statements
BonfaceKilz
2021-06-18
Add data structures for the table metadata_audit
BonfaceKilz
2021-06-18
unit: test_phenotypes: Test for multiple "WHERE" clauses
BonfaceKilz
2021-06-18
Get the diff between 2 dicts and return that as a dict
BonfaceKilz
2021-06-18
fix index error (#16)
Alexander Kabui
2021-06-18
Move the methods, "update" and "fetch", to gn3.db
BonfaceKilz
2021-06-18
tests: test_phenotype: Add function that tests "fetchone"
BonfaceKilz
2021-06-18
db: phenotypes: Update failing tests
BonfaceKilz
2021-06-18
tests: test_phenotypes: New test cases for loading phenotypes
BonfaceKilz
2021-06-14
add biweight r script and tests
Alexander Kabui
2021-06-07
db: test_db: Add extra variable in test data for "id"
BonfaceKilz
2021-06-07
Rename json_data column to json_diff_data
BonfaceKilz
2021-06-07
tests: test_db: Add a test-case for fetchall
BonfaceKilz
2021-06-07
tests: test_db: Rename TestPhenotype
BonfaceKilz
2021-06-07
tests: test_phenotype: Rename to test_db
BonfaceKilz
2021-06-03
Use prepared statements for FETCH sql function
BonfaceKilz
2021-06-03
Use prepared statements for UPDATE sql function
BonfaceKilz
2021-06-03
tests: test_audit: Update test case to check for prepared statements
BonfaceKilz
2021-06-03
Add data structures for the table metadata_audit
BonfaceKilz
2021-06-03
unit: test_phenotypes: Test for multiple "WHERE" clauses
BonfaceKilz
2021-06-03
Get the diff between 2 dicts and return that as a dict
BonfaceKilz
2021-05-30
fix index error (#16)
Alexander Kabui
2021-05-26
Move the methods, "update" and "fetch", to gn3.db
BonfaceKilz
2021-05-20
tests: test_phenotype: Add function that tests "fetchone"
BonfaceKilz
2021-05-20
db: phenotypes: Update failing tests
BonfaceKilz
2021-05-20
tests: test_phenotypes: New test cases for loading phenotypes
BonfaceKilz
2021-05-18
Added test for compose_rqtl_cmd in tests/unit/test_commands.py
zsloan
2021-05-18
Added unit test for computations/rqtl.py
zsloan
2021-05-15
Merge branch 'main' into feature/minor-fixes
Alexander Kabui
2021-05-15
index lit tuple result
Alexander Kabui
2021-05-13
Rename file_utils to fs_helpers
...
Generally avoid naming things with a "utils" prefix/ suffix since it encourages contributors to dump any new functions there; and over time, as the code grows, things get messy...
BonfaceKilz
2021-05-12
delete unused functions
Alexander Kabui
2021-05-12
rename lit_correlation_for_trait_list to lit_correlation_for_trait
Alexander Kabui
2021-05-12
rename tissue_correlation_for_trait_list with tissue_correlation_for_trait
Alexander Kabui
2021-05-12
rename p_val ro tissue_p_value for tissue_results
Alexander Kabui
2021-05-10
tests: test_species: Add test for `get_all_species`
BonfaceKilz
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