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AgeCommit message (Expand)Author
2023-07-10Fix linting errors caused by bump to Python 3.10migrate-to-python3.10Frederick Muriuki Muriithi
2023-04-06Fix linting issuesFrederick Muriuki Muriithi
2023-04-06Remove deprecated `gn3.db_utils.database_connector` functionFrederick Muriuki Muriithi
2022-12-21gn3: (gn3.random -> gn3.chancy): Rename module to avoid conflicts.Frederick Muriuki Muriithi
2022-07-29Fix failing testsFrederick Muriuki Muriithi
2022-06-21integration: test_gemma: Skip "GemmaAPITest"BonfaceKilz
2022-05-05Extract common error checking. Rename function.Frederick Muriuki Muriithi
2022-03-24Test Fixture: Create new test database and get connection to itFrederick Muriuki Muriithi
2022-03-12Test edges cases for csv files when running csvdiffBonfaceKilz
2022-03-08Fix tests, and issues caught by testsFrederick Muriuki Muriithi
2022-02-21Test partial corrs API with mix of existing and non-existing control traitsFrederick Muriuki Muriithi
2022-02-19Test partial corrs endpoint with non-existing control traitsFrederick Muriuki Muriithi
2022-02-18Test partial correlations endpoint with non-existent primary traitsFrederick Muriuki Muriithi
2022-02-17Test partial correlations endpoint with missing data in POST requestFrederick Muriuki Muriithi
2022-02-17Create client fixture for integration testsFrederick Muriuki Muriithi
2022-02-17Use pytest's "mark" feature to categorise testsFrederick Muriuki Muriithi
2021-09-27modify integration testsAlexander Kabui
2021-09-25minor fixes for unittestsAlexander Kabui
2021-09-22init endpoint tests for wgcnaAlexander Kabui
2021-08-11use normal function for correlation (#34)Alexander Kabui
2021-05-13tests: test_general: Add test case for run_r_qtl endpointBonfaceKilz
2021-05-10tests: test_gemma: Add TMPDIR to test_client()BonfaceKilz
2021-04-12Integrate correlation APIAlexander Kabui
2021-03-23Use ipfs to get genotype filesBonfaceKilz
2021-03-16delete unwanted correlation stuff (#5)Alexander Kabui
2021-03-16Refactor/clean up correlations (#4)Alexander Kabui
2021-03-15Apply pep-8 formattingBonfaceKilz
2021-03-13Correlation api (#2)Alexander Kabui
2021-03-10Add missing "/" in URL in docstringBonfaceKilz
2021-03-10Rename "covariates" to "covars" in endpoints for consistencyBonfaceKilz
2021-03-10Fix k-compute command when "loco" is trueBonfaceKilz
2021-03-08Remove "/k-gwa-computation"BonfaceKilz
2021-03-08Add "/k-gwa-compute/covars/loco/<chromosomes>/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add "/gemma/k-gwa-compute/loco/<chromosomes>/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add "/k-gwa-compute/covars/<token>"BonfaceKilz
2021-03-08Add "/gemma/k-gwa-compute/<token>"BonfaceKilz
2021-03-08Replace "compute_k_values" with "generate_gemma_cmd"BonfaceKilz
2021-03-08Add generic fn for computing k and gwa valuesBonfaceKilz
2021-03-08Apply pep-8 formattingBonfaceKilz
2021-03-08Add new endpointBonfaceKilz
2021-03-08Replace "generate_gemma_computation_cmd" with "compose_gemma_cmd"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/<k_filename>/loco/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/covars/<k_filename>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/<k_filename>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gemma/k-compute/loco/<chromosomes>/<token>"BonfaceKilz
2021-03-08Prepend all endpoints with "api"BonfaceKilz
2021-03-08Add new endpoint: "/gemma/k-compute/<token>"BonfaceKilz
2021-03-08Replace APP_DEFAULTS dict with actual conf paramsBonfaceKilz
2021-03-08Update failing tests.BonfaceKilz
2021-03-08Fix failing testsBonfaceKilz
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