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AgeCommit message (Expand)Author
2023-04-19oauth2: Link the phenotype traits to user groups.Frederick Muriuki Muriithi
2023-04-19Fix minor linting and typing issuesFrederick Muriuki Muriithi
2023-04-19auth: Setup selected traits correctlyFrederick Muriuki Muriithi
2023-04-18auth: Consistently JSON encode values.Frederick Muriuki Muriithi
2023-04-17Hook up code to use external search script for phenotypesFrederick Muriuki Muriithi
2023-04-14auth: Add external script to search for phenotypesFrederick Muriuki Muriithi
2023-04-06Remove deprecated `gn3.db_utils.database_connector` functionFrederick Muriuki Muriithi
2023-04-05Enable use of `database_connection` in scripts without current_appFrederick Muriuki Muriithi
2023-02-13scripts: Fallback to 1 worker when indexing.Arun Isaac
2023-02-13scripts: Type hint xapian indexing script.Arun Isaac
2022-10-18Add xapian indexing script.Arun Isaac
2022-07-29New script to run sample correlationsFrederick Muriuki Muriithi
2022-06-28Parse the method from UI before passing it to external processFrederick Muriuki Muriithi
2022-06-20Restrict partial correlation method choicesFrederick Muriuki Muriithi
2022-05-24Run partial correlations with external scriptFrederick Muriuki Muriithi
2022-05-24New script to compute partial correlationsFrederick Muriuki Muriithi
2022-05-05Extract common error checking. Rename function.Frederick Muriuki Muriithi
2022-03-22Merge branch 'feature/add_rqtl_pairscan' of https://github.com/zsloan/genenet...zsloan
2022-03-22Change order of if statements for running genoprob commandzsloan
2022-03-22Updated rqtl_wrapper to also return a map file when doing a pair-scan (since ...zsloan
2022-03-22Added line priting pair-scan results to CSV and changed the default step-size...zsloan
2022-03-22- Added scan_func function that determines whether scanone or scantwozsloan
2022-03-22Added option for running pairscan to rqtl_wrapper.Rzsloan
2022-03-08Create database connections within context managersFrederick Muriuki Muriithi
2022-03-03Run partial correlations in an external processFrederick Muriuki Muriithi
2022-02-11Quote shell variables to prevent globbingFrederick Muriuki Muriithi
2022-02-02Fix R/qtl covar bugzsloan
2022-02-02remove commentsAlexander Kabui
2022-02-02match case string input to booleanAlexander Kabui
2022-02-02fix for parametric inputAlexander Kabui
2022-02-02use user input significanceAlexander Kabui
2022-02-02new line fixAlexander Kabui
2022-02-02add new json outputAlexander Kabui
2022-01-22minor refactoringAlexander Kabui
2022-01-22function override:fix target specific output file for networkAlexander Kabui
2022-01-22generate networkAlexander Kabui
2022-01-22generate ctl plots for each traitAlexander Kabui
2022-01-22fixes for ctl script:generate ctl ctl_significant jsonAlexander Kabui
2022-01-22bugfixes for script;create pheno and geno objectsAlexander Kabui
2022-01-22generate lineplotAlexander Kabui
2022-01-22minor fix:read input data from json fileAlexander Kabui
2022-01-22export json dataAlexander Kabui
2022-01-22get significant interactionsAlexander Kabui
2022-01-22perform the ctl scanAlexander Kabui
2022-01-22fetch genotypes and phenotype filesAlexander Kabui
2022-01-22init script ctl analysisAlexander Kabui
2021-12-22Refactor wgcna (#63)Alexander Kabui
2021-11-11Merge branch 'main' into feature/add_rqtl_pairscanzsloan
2021-10-29Feature/biweight reimplementation (#47)Alexander Kabui
2021-10-25minor fixes for sript enable annotationsAlexander Kabui
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