index
:
genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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Author
2024-06-14
fix: typehints in index-genenetwork script
John Nduli
2024-06-14
fix: fix incorrect parameters in index_query function
John Nduli
2024-06-12
Move the generated xapian files to the correct directory.
Munyoki Kilyungi
2024-06-12
Set the file path for the logger.
Munyoki Kilyungi
2024-06-12
Change the date format for the logger.
Munyoki Kilyungi
2024-06-12
Log how long it takes to run the indexing script.
Munyoki Kilyungi
2024-06-12
Check for a running process by viewing the build dir's contents.
Munyoki Kilyungi
2024-06-12
Return 0 if data changes, else exit with 1.
Munyoki Kilyungi
2024-06-12
Explicitly pass sparql_uri to script.
Munyoki Kilyungi
2024-06-12
Rework how the indexes are built.
Munyoki Kilyungi
2024-06-12
Add method to check the validity of the tables+RDF checksums.
Munyoki Kilyungi
2024-06-12
Generate a SHA256 checksum for the generif graph.
Munyoki Kilyungi
2024-06-01
Use global cache to store generif metadata.
Munyoki Kilyungi
2024-06-01
Add geneRIF to gene index.
Munyoki Kilyungi
2024-03-18
pep8 formatting
Alexander_Kabui
2024-03-18
pep8 formatting
Alexander_Kabui
2024-03-15
add pubmed metadata
Alexander_Kabui
2024-03-13
Add documentation on what the script is for and does.
Frederick Muriuki Muriithi
2024-03-13
Remove debug prints in the script
Frederick Muriuki Muriithi
2024-03-12
Commit migration script for CaseAttribute* tables
Frederick Muriuki Muriithi
2023-12-05
Move script to gn-auth
Frederick Muriuki Muriithi
2023-11-02
Make scripts directory a package to eliminate path issues.
Frederick Muriuki Muriithi
2023-10-27
Make scripts/ a module since it referenced in argparse_actions.py.
Munyoki Kilyungi
2023-10-10
Remove authentication from GN3
Frederick Muriuki Muriithi
2023-08-02
Use correct variable
Frederick Muriuki Muriithi
2023-08-02
Fix module name.
Frederick Muriuki Muriithi
2023-08-02
Assign `group-leader` role to the admin for automatic group.
Frederick Muriuki Muriithi
2023-06-02
auth: Increase limit to 100K records
Frederick Muriuki Muriithi
2023-06-02
auth: Add delay between DB inserts
Frederick Muriuki Muriithi
2023-06-02
Auth: Bug: Display all admins before taking choice
Frederick Muriuki Muriithi
2023-05-31
scripts: Write table checksums into index.
Arun Isaac
2023-05-31
scripts: Introduce SQLTableClause.
Arun Isaac
2023-05-31
scripts: Fold long lines.
Arun Isaac
2023-05-31
scripts: Ensure only one indexing job may run at a time.
Arun Isaac
2023-05-30
Fix linting errors and failing tests
Frederick Muriuki Muriithi
2023-05-30
Enable registering sys-admin on CLI
Frederick Muriuki Muriithi
2023-05-26
Document CLI Utility Commands
Frederick Muriuki Muriithi
2023-05-25
Add some error checks.
Frederick Muriuki Muriithi
2023-05-25
Script to assign existing data to publicly-visible resources
Frederick Muriuki Muriithi
2023-05-22
Make directory at "path" and all intermediate ones.
Frederick Muriuki Muriithi
2023-04-19
oauth2: Link the phenotype traits to user groups.
Frederick Muriuki Muriithi
2023-04-19
Fix minor linting and typing issues
Frederick Muriuki Muriithi
2023-04-19
auth: Setup selected traits correctly
Frederick Muriuki Muriithi
2023-04-18
auth: Consistently JSON encode values.
Frederick Muriuki Muriithi
2023-04-17
Hook up code to use external search script for phenotypes
Frederick Muriuki Muriithi
2023-04-14
auth: Add external script to search for phenotypes
Frederick Muriuki Muriithi
2023-04-06
Remove deprecated `gn3.db_utils.database_connector` function
Frederick Muriuki Muriithi
2023-04-05
Enable use of `database_connection` in scripts without current_app
Frederick Muriuki Muriithi
2023-02-13
scripts: Fallback to 1 worker when indexing.
Arun Isaac
2023-02-13
scripts: Type hint xapian indexing script.
Arun Isaac
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