genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2023-05-31	scripts: Write table checksums into index....* scripts/index-genenetwork (main): Write table checksums into index.	Arun Isaac
2023-05-31	scripts: Introduce SQLTableClause....* scripts/index-genenetwork (SQLTableClause): New variable. (genes_query, phenotypes_query): Express tables using SQLTableClause. (serialize_sql): Serialize SQLTableClause.	Arun Isaac
2023-05-31	scripts: Fold long lines....* scripts/index-genenetwork (write_document, index_query): Fold long lines.	Arun Isaac
2023-05-31	scripts: Ensure only one indexing job may run at a time....* scripts/index-genenetwork (main): Ensure no other indexing job is running.	Arun Isaac
2023-05-22	Make directory at "path" and all intermediate ones....Make the directory at the given path, and any intermediate ones to avoid errors in the indexing code when the directory, or its parent(s) do not exist.	Frederick Muriuki Muriithi
2023-04-05	Enable use of `database_connection` in scripts without current_app...There is need to run external scripts using the same configurations as the application but without the need to couple the script to the application. In this case, we provide the needed configuration directly in the CLI, and modify the existing `gn3.db_utils.database_connection` function to allow it to work coupled to the app or otherwise.	Frederick Muriuki Muriithi
2023-02-13	scripts: Fallback to 1 worker when indexing....* scripts/index-genenetwork (worker_queue): Set default number of workers to 1 if the number of CPUs cannot be determined.	Arun Isaac
2023-02-13	scripts: Type hint xapian indexing script....* scripts/index-genenetwork: Import Callable, Generator, Iterable and List from typing. Type hint all functions.	Arun Isaac
2022-10-18	Add xapian indexing script....* scripts/index-genenetwork: New file. * setup.py (install_requires): Add click, pymonad and xapian-bindings. (scripts): Add scripts/index-genenetwork.	Arun Isaac