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genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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index-genenetwork
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Author
2024-07-12
Rename hash_rdf_graph -> md5hash_ttl_dir.
Munyoki Kilyungi
2024-07-12
Use correct ttl-dir path when generating checksums.
Munyoki Kilyungi
2024-07-03
Return a "-1" if the turtle directory does not exist.
Munyoki Kilyungi
2024-07-03
Generate a checksum for all the ttl files.
Munyoki Kilyungi
2024-07-03
Add type-hints to hash_generif_graph.
Munyoki Kilyungi
2024-07-03
Refactor how the generif md5 sum is calculated and stored in XAPIAN.
Munyoki Kilyungi
2024-07-03
Use correct cache for RIF/Wiki entries.
Munyoki Kilyungi
2024-07-03
feat: drop intermediate folders when running parallel xapian compact
John Nduli
2024-07-03
feat: add support for parallel xapian compact
John Nduli
2024-07-03
feat: index rif and wiki without positions
John Nduli
2024-07-03
feat: drop common words when building rdf caches
John Nduli
2024-07-03
feat: set 67 parallel processes to run in prod
John Nduli
2024-07-03
fix: remove namespaces since child processes copy the rdf caches
John Nduli
2024-07-03
fix: use correct prefix and index key; group wiki cache query
John Nduli
2024-07-03
feat: add wikidata indexing
John Nduli
2024-07-03
feat: add global wikicache
John Nduli
2024-07-03
feat: add sparql query to get wikidata
John Nduli
2024-06-24
Use dataset Name instead of FullName for indexing
zsloan
2024-06-18
Revert "Set the file path for the logger."
Munyoki Kilyungi
2024-06-18
refactor: drop global variables
John Nduli
2024-06-17
Check table names in Xapian; if not, default to "-1".
Munyoki Kilyungi
2024-06-17
Fetch distinct comments.
Munyoki Kilyungi
2024-06-14
fix: typehints in index-genenetwork script
John Nduli
2024-06-14
fix: fix incorrect parameters in index_query function
John Nduli
2024-06-12
Move the generated xapian files to the correct directory.
Munyoki Kilyungi
2024-06-12
Set the file path for the logger.
Munyoki Kilyungi
2024-06-12
Change the date format for the logger.
Munyoki Kilyungi
2024-06-12
Log how long it takes to run the indexing script.
Munyoki Kilyungi
2024-06-12
Check for a running process by viewing the build dir's contents.
Munyoki Kilyungi
2024-06-12
Return 0 if data changes, else exit with 1.
Munyoki Kilyungi
2024-06-12
Explicitly pass sparql_uri to script.
Munyoki Kilyungi
2024-06-12
Rework how the indexes are built.
Munyoki Kilyungi
2024-06-12
Add method to check the validity of the tables+RDF checksums.
Munyoki Kilyungi
2024-06-12
Generate a SHA256 checksum for the generif graph.
Munyoki Kilyungi
2024-06-01
Use global cache to store generif metadata.
Munyoki Kilyungi
2024-06-01
Add geneRIF to gene index.
Munyoki Kilyungi
2023-05-31
scripts: Write table checksums into index.
Arun Isaac
2023-05-31
scripts: Introduce SQLTableClause.
Arun Isaac
2023-05-31
scripts: Fold long lines.
Arun Isaac
2023-05-31
scripts: Ensure only one indexing job may run at a time.
Arun Isaac
2023-05-22
Make directory at "path" and all intermediate ones.
Frederick Muriuki Muriithi
2023-04-05
Enable use of `database_connection` in scripts without current_app
Frederick Muriuki Muriithi
2023-02-13
scripts: Fallback to 1 worker when indexing.
Arun Isaac
2023-02-13
scripts: Type hint xapian indexing script.
Arun Isaac
2022-10-18
Add xapian indexing script.
Arun Isaac
