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2024-12-04Merge pull request #203 from genenetwork/feature/rqtl2-endpoints-with-filesAlexander Kabui
2024-12-02Fix probeset metadata query to include dataset namezsloan
2024-11-28feat: define general endpoint for streaming stdout using unique identifier.Alexander_Kabui
2024-11-27feat: return run id for compute and streaming api's.Alexander_Kabui
2024-11-26feat: Implement reading from file functionalityAlexander_Kabui
2024-11-22feat: return pointer position from where the file was last read.Alexander_Kabui
2024-11-22feat: Add new endpoint to read stdout given a file identifier.Alexander_Kabui
2024-11-22feat: register rqtl2 blueprint to app.Alexander_Kabui
2024-11-22feat: implement ednpoint for computing qtl using rqtl2.Alexander_Kabui
2024-11-15Fix bug where case attribute editing didn't work if a case attribute waszsloan
2024-11-14Fix auth endpoint for case attribute editingzsloan
2024-11-14Fix case attribute queryzsloan
2024-11-12Remove unused setting.Frederick Muriuki Muriithi
2024-11-12Remove unused import.Frederick Muriuki Muriithi
2024-11-12mypy: Rename and annotate variables to silence mypyFrederick Muriuki Muriithi
2024-11-12Pure aesthetics: No functional change.Frederick Muriuki Muriithi
2024-11-11Allow extra database connection options on URIFrederick Muriuki Muriithi
2024-10-28fix: remove dangerous default configs and have a detailed error with how to c...John Nduli
2024-10-18refactor: replace gn3.auth.db with gn3.sqlite_db_utils and drop all refs to g...John Nduli
2024-10-18refactor: move definition of auth errs and remove auth cli utilsJohn Nduli
2024-10-18refactor: remove unused gn3.auth modulesJohn Nduli
2024-10-15Lint: Fix linting errors.Frederick Muriuki Muriithi
2024-10-15Pass in correct file path.Frederick Muriuki Muriithi
2024-10-15fix: use require_token to validate gn3 apisJohn Nduli
2024-10-14Run python black against file.Munyoki Kilyungi
2024-10-14Replace CONSTRUCT with SELECT for fetching RIF NCBI entries.Munyoki Kilyungi
2024-10-14Add end-point for fetching NCBI metadata.Munyoki Kilyungi
2024-10-14Add function for fetching NCBI data.Munyoki Kilyungi
2024-09-30chore: pylint code fixJohn Nduli
2024-09-30feat: rollback mysql transaction when rdf insert failsJohn Nduli
2024-09-30fix: rdf and sql queries for fetching rif dataJohn Nduli
2024-09-27Debug command.Frederick Muriuki Muriithi
2024-09-27Bug: Use absolute paths in place of relative paths.Frederick Muriuki Muriithi
2024-09-27Bug: Use absolute path in place of relative pathFrederick Muriuki Muriithi
2024-09-23Revert "Remove one-line if/else statement."Munyoki Kilyungi
2024-09-23Remove one-line if/else statement.Munyoki Kilyungi
2024-09-23Use correct object modifier for a label when inserting a comment.Munyoki Kilyungi
2024-09-23Update docstring for "update_wiki_comment".Munyoki Kilyungi
2024-09-23Use correct object modifier in triple when fetching comment history.Munyoki Kilyungi
2024-09-23Use correct modifier when getting species name in SPARQL.Munyoki Kilyungi
2024-09-23Remove dead variable from RDF query.Munyoki Kilyungi
2024-09-23Alphabetically sort the categories and pubmed_ids array.Munyoki Kilyungi
2024-09-23Remove un-necessary triple in comment history RDF query.Munyoki Kilyungi
2024-09-19Use correct return type.Munyoki Kilyungi
2024-09-19Remove extraneous keyword.Munyoki Kilyungi
2024-09-18Pass in insert_dict instead of payload in "get_wiki_entries".Munyoki Kilyungi
2024-09-18Pass in the createtime as an arg when inserting into RDF graph.Munyoki Kilyungi
2024-09-18Get the next versionId from SQL.Munyoki Kilyungi
2024-09-18Update "POST /wiki/comment_id/edit" to have RDF edits.Munyoki Kilyungi
2024-09-18Fix typo.Munyoki Kilyungi