genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2024-08-26	Fetch all the wiki entries by symbol.	Munyoki Kilyungi
2024-08-26	Move constants to their own file.	Munyoki Kilyungi
2024-08-26	Run autopep8 against file.	Munyoki Kilyungi
2024-08-26	chore: fix pylint errors	John Nduli
2024-08-26	refactor: split out utlities into their modules and change api to use metadata	John Nduli
2024-08-26	refactor: clean up wiki edit implementation	John Nduli
2024-08-26	feat: add support for categories in edit query and clearer errors	John Nduli
2024-08-26	feat: support for edit wiki entry	John Nduli
2024-08-13	Fix pylint errors.	Munyoki Kilyungi
2024-08-09	Use correct stemming strategy when searching.	Munyoki Kilyungi
2024-08-09	Add RIF/WIKI as search prefixes for XRF/XWK.	Munyoki Kilyungi
2024-08-01	Add logging for helping with troubleshooting.	Frederick Muriuki Muriithi
2024-08-01	Add handler for unhandled exceptions from `gn3.oauth2` module.	Frederick Muriuki Muriithi
2024-08-01	Update case-attribute editing to use new authorisation.	Frederick Muriuki Muriithi
2024-08-01	Add `gn3.oauth2` module to handle authorisations	Frederick Muriuki Muriithi
2024-08-01	Stem group field regardless of case.	Arun Isaac
2024-08-01	Stem all the time.	Arun Isaac
2024-07-08	Pass output directory to R/qtl script instead of pulling it from the	zsloan
2024-07-05	fix: return query error message from xapian	John Nduli
2024-07-03	fix: use correct prefix and index key; group wiki cache query	John Nduli
2024-07-03	feat: add wikidata prefix to search api	John Nduli
2024-06-26	Increase max number of results to 50000 for Xapian search	zsloan
2024-06-14	fix: typehints in index-genenetwork script	John Nduli
2024-06-12	refactor: add db_utils global logger that will be the default	John Nduli
2024-06-12	fix: use current_app's logger to log db errors	John Nduli
2024-06-12	fix: log errors when an exception occurs due to db_utils	John Nduli
2024-06-01	Add geneRIF prefix.	Munyoki Kilyungi
2024-05-20	Delete search endpoints for datasets/publications.	Munyoki Kilyungi
2024-05-20	Remove unused variable.	Munyoki Kilyungi
2024-05-09	Improve error messaging for use of invalid fahamu token.	Alexander_Kabui
2024-05-01	pep8 formatting	Alexander_Kabui
2024-05-01	Delete debug code	Alexander_Kabui
2024-05-01	Debug: check for if config is loaded in gn3.	Alexander_Kabui
2024-05-01	Fix: fix string formatting error and remove unused imports.	Alexander_Kabui
2024-05-01	Refactoring	Alexander_Kabui
2024-05-01	Debug:fix issue use current_app to fetch config	Alexander_Kabui
2024-05-01	Debug Process for LLM_DB_PATH	Alexander_Kabui
2024-05-01	Load LLM_DB_PATH as a setting.	Alexander_Kabui
2024-05-01	Add more error info for Database Open error raised	Alexander_Kabui
2024-04-30	Add a general Exception for the /rating api	Alexander_Kabui
2024-04-30	Replace SQLITE_DB_PATH with LLM_DB_PATH for llm db path.	Alexander_Kabui
2024-04-30	Update LLM_DB_PATH config.	Alexander_Kabui
2024-04-30	Add docstring to view_history function.	Munyoki Kilyungi
2024-04-30	Use JWT tokens from gn-auth.	Munyoki Kilyungi
2024-04-30	Add an endpoint to query a dataset's git history from it's id.	Munyoki Kilyungi
2024-04-30	Add a method for saving a dataset's metadata to git.	Munyoki Kilyungi
2024-04-30	Rename retrieve_dataset_metadata to retrieve_metadata.	Munyoki Kilyungi
2024-04-30	Remove an f-string that doesn't have any interpolated variables.	Munyoki Kilyungi
2024-04-30	Add command function that returns an Either monad.	Munyoki Kilyungi
2024-04-29	Prevent error when group isn't in parents/f1s JSON file	zsloan