| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-06-01 | Add geneRIF prefix. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-05-20 | Delete search endpoints for datasets/publications. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Delete "query_and_frame" import. (search_datasets): Delete. (search_publications): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-05-20 | Remove unused variable. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-05-09 | Improve error messaging for use of invalid fahamu token. | Alexander_Kabui | |
| 2024-05-01 | pep8 formatting | Alexander_Kabui | |
| 2024-05-01 | Delete debug code | Alexander_Kabui | |
| 2024-05-01 | Debug: check for if config is loaded in gn3. | Alexander_Kabui | |
| 2024-05-01 | Fix: fix string formatting error and remove unused imports. | Alexander_Kabui | |
| 2024-05-01 | Refactoring | Alexander_Kabui | |
| *general cleanup for debug code * improve error messaging for successful rating | |||
| 2024-05-01 | Debug:fix issue use current_app to fetch config | Alexander_Kabui | |
| 2024-05-01 | Debug Process for LLM_DB_PATH | Alexander_Kabui | |
| * this commit is a debugging process for llm_path on cd * issue: writes to db but not correct path | |||
| 2024-05-01 | Load LLM_DB_PATH as a setting. | Alexander_Kabui | |
| 2024-05-01 | Add more error info for Database Open error raised | Alexander_Kabui | |
| 2024-04-30 | Add a general Exception for the /rating api | Alexander_Kabui | |
| 2024-04-30 | Replace SQLITE_DB_PATH with LLM_DB_PATH for llm db path. | Alexander_Kabui | |
| 2024-04-30 | Update LLM_DB_PATH config. | Alexander_Kabui | |
| 2024-04-30 | Add docstring to view_history function. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Use JWT tokens from gn-auth. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Import time, jwt, AUthorisationError. (edit_dataset): Use JWT tokens from gn-auth and validate them. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Add an endpoint to query a dataset's git history from it's id. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Import get_history. (view_history): New endpoint. * gn3/db/datasets.py (get_history): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Add a method for saving a dataset's metadata to git. | Munyoki Kilyungi | |
| * gn3/db/datasets.py (retrieve_metadata): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Rename retrieve_dataset_metadata to retrieve_metadata. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Remove an f-string that doesn't have any interpolated variables. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-30 | Add command function that returns an Either monad. | Munyoki Kilyungi | |
| * gn3/commands.py: Import Either, Left, Right. (monadic_run_cmd): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-29 | Prevent error when group isn't in parents/f1s JSON file | zsloan | |
| 2024-04-15 | Delete unused imports. | Munyoki Kilyungi | |
| * gn3/api/llm.py: (rate_document, logging): Remove unused imports. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-04-11 | Include parents/f1s in default samplelist + add boolean options for them | zsloan | |
| 2024-04-04 | Rephrase user feedback for Fahamu API in case it takes too long to respond. | Alexander_Kabui | |
| 2024-03-26 | add sqlite-db-path config | Alexander_Kabui | |
| 2024-03-26 | fetch pubmed file from /gn-meta/lit | Alexander_Kabui | |
| 2024-03-25 | pep8 formatting | Alexander_Kabui | |
| 2024-03-25 | save db data on SQLITE_PATH file path | Alexander_Kabui | |
| 2024-03-25 | fix user_id type | Alexander_Kabui | |
| 2024-03-25 | enable logigng info for api <rating> | Alexander_Kabui | |
| 2024-03-25 | match user id to type str | Alexander_Kabui | |
| 2024-03-25 | pep8 formatting | Alexander_Kabui | |
| 2024-03-25 | fetch tmpdir from current app connfig | Alexander_Kabui | |
| 2024-03-25 | fix db path issue for lllm | Alexander_Kabui | |
| 2024-03-25 | use data dir for files | Alexander_Kabui | |
| 2024-03-22 | use tmp for test db | Alexander_Kabui | |
| 2024-03-22 | dump gnqa rating data to db | Alexander_Kabui | |
| 2024-03-22 | add gnqa db path | Alexander_Kabui | |
| 2024-03-18 | delete test file | Alexander_Kabui | |
| 2024-03-18 | fetch pubmed data from tmpdir | Alexander_Kabui | |
| 2024-03-15 | add pubmed metadata | Alexander_Kabui | |
| 2024-03-15 | add error handling for invalid tokens | Alexander_Kabui | |
| 2024-03-15 | Remove ALL html templates from GeneNetwork3 | Frederick Muriuki Muriithi | |
| GN3 provides an API to provide data, and needs no HTML UI. | |||
| 2024-03-04 | Check for exception args and provide traceback. | Frederick Muriuki Muriithi | |
| 2024-03-04 | Handle generic exceptions gracefully. | Frederick Muriuki Muriithi | |
| 2024-02-25 | Disable too-many-arguments for "run_reaper". | Munyoki Kilyungi | |
| * gn3/computations/qtlreaper.py: Disable "too-many-arguments" pylint check. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-02-25 | Fix line-too-long error. | Munyoki Kilyungi | |
| * gn3/heatmaps.py (build_heatmap): Break down call to run_reaper command into many lines to fix pylint error. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
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| GeneNetwork3 REST API for data science and machine learning |
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