| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-09-11 | Abstract out sanitizing json-ld result into a function. | Munyoki Kilyungi | |
| * gn3/db/rdf/wiki.py (__sanitize_result): New function. (get_wiki_entries_by_symbol): Delete sanitization code. (get_comment_history): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-11 | Update RDF queries to match ADR/000/gn-transform-databases. | Munyoki Kilyungi | |
| See: <https://issues.genenetwork.org/topics/ADR/gn-transform-databases/000-remodel-rif-transform-with-predicateobject-lists> for more context. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-06 | Modify endpoint to use query string. | Alexander_Kabui | |
| 2024-09-06 | Merge pull request #188 from genenetwork/chores/merge-gnqa-api | Alexander Kabui | |
| Chores/merge gnqa api | |||
| 2024-09-05 | Update comment explaining why CONSTRUCT doesn't respect ORDER BY. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Correctly get categories in response. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Sort the RIF history data in reverse order. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Enforce array type to "categories" and "pmids" fields. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Set OPTIONAL values to default to an empty string. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Rename "pubmed_id" -> "pubmed_ids" to be explicit it's an array. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Remove type from wiki history. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Fix type error. | Munyoki Kilyungi | |
| * gn3/api/metadata_api/wiki.py: Remove FIXME comment. * gn3/db/wiki.py: Fix type error. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Use the correct header to request json-ld data. | Munyoki Kilyungi | |
| In HTTP, we use content negotiation to server different representations of a resource to the same URI to help the user agent specify which representation is best suited for the user: <https://developer.mozilla.org/en-US/docs/Web/HTTP/Content_negotiation> The "Accept" requet HTTP indicates which content types the user is supposed to understand: <https://developer.mozilla.org/en-US/docs/Web/HTTP/Headers/Accept> * gn3/api/metadata_api/wiki.py (get_wiki_entries): Use the "Accept" header. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Add comment history. | Munyoki Kilyungi | |
| * gn3/api/metadata_api/wiki.py: Import get_comment_history. (get_history): New end-point. * gn3/db/rdf/wiki.py: (get_comment_history): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Always output the top-level graph when compacting. | Munyoki Kilyungi | |
| This makes sure that the API is always consistent. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Use correct prefix when querying for email in triple. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Create global wiki context usable by all functions in gn3.rdf.wiki | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Ignore type error and add a FIXME stub. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Add missing doc-strings to make pylint pass. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Restructure RDF module. | Munyoki Kilyungi | |
| * gn3/api/metadata.py: Import constants from gn3.db.rdf * gn3/api/metadata_api/wiki.py: Ditto. Import "get_wiki_entries_by_symbol" from gn3.db.rdf.wiki. * gn3/db/constants.py: Delete file and move all constants ... * gn3/db/rdf.py: ... and functions ... * gn3/db/rdf/__init__.py: ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-05 | Sort previos records by datetime. | Alexander_Kabui | |
| 2024-09-05 | Apply pep8 formatting. | Alexander_Kabui | |
| 2024-09-05 | Create new endpoints for fetching user previous records. | Alexander_Kabui | |
| 2024-09-03 | Remove unused imports. | Alexander_Kabui | |
| 2024-09-03 | Use Jsonb for storing results. | Alexander_Kabui | |
| 2024-09-03 | Raise KeyError for doc_id not found in doc_ids. | Alexander_Kabui | |
| 2024-09-02 | Remove redundant function for fetching data with task_id. | Alexander_Kabui | |
| 2024-09-02 | Modify default backoff_factor for adapter. | Alexander_Kabui | |
| 2024-09-02 | Add docs for custom request method. | Alexander_Kabui | |
| 2024-09-02 | Rename task_id to task_object. | Alexander_Kabui | |
| 2024-09-02 | Refactor doc_id object. | Alexander_Kabui | |
| 2024-09-02 | Remove unecessary check for open file. | Alexander_Kabui | |
| 2024-09-02 | Fix minor syntax issue. | Alexander_Kabui | |
| 2024-09-02 | Fix spacing after punctuation. | Alexander_Kabui | |
| 2024-09-02 | Use default datetime for table. | Alexander_Kabui | |
| 2024-09-02 | Add spacing after punctuation. | Alexander_Kabui | |
| 2024-08-30 | Fix merge conflict. | Alexander_Kabui | |
| 2024-08-29 | chore: pylint docstring | John Nduli | |
| 2024-08-29 | docs: add function comments | John Nduli | |
| 2024-08-29 | feat: add api calls to get categories and last comment | John Nduli | |
| 2024-08-29 | Add default timestamp and and primary key for Rating table. | Alexander_Kabui | |
| 2024-08-29 | Fix minor typo. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Remove "@id" re-map in the json-ld base context. | Munyoki Kilyungi | |
| * gn3/db/constants.py [BASE_CONTEXT]: Remove "id" key. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Fetch the latest comment by the versionId. | Munyoki Kilyungi | |
| * gn3/db/rdf.py (get_wiki_entries_by_symbol): Update query to fetch the latest query by the version. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Make fetching wiki entries by symbol case insensitive. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Add "created" to wiki return. | Munyoki Kilyungi | |
| * gn3/db/rdf.py (get_wiki_entries_by_symbol): Add "created" to dictionary. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Update doc-string for "handle_sparql_errors". | Munyoki Kilyungi | |
| * gn3/errors.py (handle_sparql_errors): Correct the doc-string. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Return the correct status error code for url errors. | Munyoki Kilyungi | |
| * gn3/errors.py (url_server_error): Return a 500 http status code for URL server errors. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Add logging for gn llm errors. | Alexander_Kabui | |
| 2024-08-29 | Check for empty values when fetching search history. | Alexander_Kabui | |
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