genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2024-09-12	Fix pylint errors.	Munyoki Kilyungi
2024-09-12	feat: pick results from sqlite3 if they were stored	John Nduli
2024-09-12	Initialise the package to ensure setuptools finds it.	Frederick Muriuki Muriithi
2024-09-12	BugFix: assign value and use variable.	Frederick Muriuki Muriithi
2024-09-12	Fix failing tests after merging in Pjotr's pull request.	Frederick Muriuki Muriithi
2024-09-12	Gracefully print out debug messages even outside app context	Frederick Muriuki Muriithi
2024-09-12	From gn3 only use TMPDIR/gn3 paths	Pjotr Prins
2024-09-12	Make sure dir exists before running R/qtl	Pjotr Prins
2024-09-12	Replace TMPDIR/output with TMPDIR/gn3 so it is clear where it comes from	Pjotr Prins
2024-09-12	Modify script paths so they can be edited in Guix	Pjotr Prins
2024-09-12	rqtl_wrapper: minor fixes	Pjotr Prins
2024-09-12	Mistake using envvar	Pjotr Prins
2024-09-12	Make sure TMPDIR directories exist!	Pjotr Prins
2024-09-12	Getting Rqtl to run on fallback	Pjotr Prins
2024-09-12	assert_paths_exist: make throw_error optional	Pjotr Prins
2024-09-12	gn3/errors.py: add stack trace to error log	Pjotr Prins
2024-09-12	Move assert_paths_exist into fs_helpers	Pjotr Prins
2024-09-12	Change behavior of do_paths_exist to actually throw useful error	Pjotr Prins
2024-09-12	Getting Rqtl to run on fallback	Pjotr Prins
2024-09-12	assert_paths_exist: make throw_error optional	Pjotr Prins
2024-09-12	Move assert_paths_exist into fs_helpers	Pjotr Prins
2024-09-12	Change behavior of do_paths_exist to actually throw useful error	Pjotr Prins
2024-09-12	Make the gnqa search endpoint a get request.	Alexander_Kabui
2024-09-11	Minor typo fix.	Alexander_Kabui
2024-09-11	Update docs on use for custom request when query fahamu Api.	Alexander_Kabui
2024-09-11	Update SPARQL queries to fetch from graph with a default value.	Munyoki Kilyungi
2024-09-11	Handle case when result is empty when sanitizing json-ld result.	Munyoki Kilyungi
2024-09-11	Replace format-string with f-strings.	Munyoki Kilyungi
2024-09-11	Fix mypy errors.	Munyoki Kilyungi
2024-09-11	Run python-black against file.	Munyoki Kilyungi
2024-09-11	Move comment on the manual sort to the doc-string.	Munyoki Kilyungi
2024-09-11	Abstract out sanitizing json-ld result into a function.	Munyoki Kilyungi
2024-09-11	Update RDF queries to match ADR/000/gn-transform-databases.	Munyoki Kilyungi
2024-09-06	Modify endpoint to use query string.	Alexander_Kabui
2024-09-06	Merge pull request #188 from genenetwork/chores/merge-gnqa-api	Alexander Kabui
2024-09-05	Update comment explaining why CONSTRUCT doesn't respect ORDER BY.	Munyoki Kilyungi
2024-09-05	Correctly get categories in response.	Munyoki Kilyungi
2024-09-05	Sort the RIF history data in reverse order.	Munyoki Kilyungi
2024-09-05	Enforce array type to "categories" and "pmids" fields.	Munyoki Kilyungi
2024-09-05	Set OPTIONAL values to default to an empty string.	Munyoki Kilyungi
2024-09-05	Rename "pubmed_id" -> "pubmed_ids" to be explicit it's an array.	Munyoki Kilyungi
2024-09-05	Remove type from wiki history.	Munyoki Kilyungi
2024-09-05	Fix type error.	Munyoki Kilyungi
2024-09-05	Use the correct header to request json-ld data.	Munyoki Kilyungi
2024-09-05	Add comment history.	Munyoki Kilyungi
2024-09-05	Always output the top-level graph when compacting.	Munyoki Kilyungi
2024-09-05	Use correct prefix when querying for email in triple.	Munyoki Kilyungi
2024-09-05	Create global wiki context usable by all functions in gn3.rdf.wiki	Munyoki Kilyungi
2024-09-05	Ignore type error and add a FIXME stub.	Munyoki Kilyungi
2024-09-05	Add missing doc-strings to make pylint pass.	Munyoki Kilyungi