genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2021-03-08	Use new extract_uploaded_file fn when uploading metadata	BonfaceKilz
2021-03-08	Extract files to "/TMPDIR/TOKEN"	BonfaceKilz
2021-03-08	Move "generate_random_n_string" to file_utils	BonfaceKilz
2021-03-08	Fix failing tests	BonfaceKilz
2021-03-08	gn3: commands: Update docstring	BonfaceKilz
2021-03-08	Add extra endpoint for checking the status of a command	BonfaceKilz
2021-03-08	Make the name of the redis job queue configurable	BonfaceKilz
2021-02-24	Rename "/gemma/run" to "/gemma/k-gwa-computation"	BonfaceKilz
2021-02-24	Update how gemma(extracted from gn2) is computed	BonfaceKilz
2021-02-24	Create a new helper function for generating k_values and GWA	BonfaceKilz
2021-02-24	Add procedure that checks whether a list of paths exist	BonfaceKilz
2021-02-24	Check if phenotype exists before creating one	BonfaceKilz
2021-02-24	Add new procedure that computes the hash of an array of strings	BonfaceKilz
2021-02-24	Add mypy-typing to function	BonfaceKilz
2021-02-24	Append random 6 chars to generated phenotype file	BonfaceKilz
2021-02-24	Create a new method for generating a valid phenotype file on the fly	BonfaceKilz
2021-02-24	Add GENODIR extra param	BonfaceKilz
2021-02-24	Add endpoint for running GEMMA	BonfaceKilz
2021-02-24	Delete unnececessary gemma endpoints	BonfaceKilz
2021-02-24	Remove test "/gemma" stub	BonfaceKilz
2021-02-24	gn3: api: gemma: Add endpoint for checking gemma-wrapper version	BonfaceKilz
2021-02-24	gn3: commands: Remove token and metadata_filename args	BonfaceKilz
2021-02-24	Add stubbed gemma endpoints	BonfaceKilz
2021-02-16	Return the correct message and status code in "/metadata/upload"	BonfaceKilz
2021-02-16	Register "general" blueprint endpoints	BonfaceKilz
2021-02-16	Add extra default config for bcrypt	BonfaceKilz
2021-02-16	Add new endpoint for uploading data	BonfaceKilz
2021-02-16	Add procedure for uploading gzipped file	BonfaceKilz
2021-02-16	Add extra option to set email when queueing CMD	BonfaceKilz
2021-02-16	Add basic integration tests to test out the API	BonfaceKilz
2021-02-16	Register blueprints in gn3/app.py	BonfaceKilz
2021-02-16	gn3: commands: Add new procedure for running a command	BonfaceKilz
2021-02-15	Add default redis config	BonfaceKilz
2021-02-15	Add test stubbed gemma endpoint	BonfaceKilz
2021-02-15	Bootsrap the flask application	BonfaceKilz
2021-02-12	Add configuration file for the project	BonfaceKilz
2021-02-12	Use sorted list of files when calculating md5sums of directory	BonfaceKilz
2021-02-12	Add custom gn3 exceptions	BonfaceKilz
2021-02-12	Add new procedure for queueing a command	BonfaceKilz
2021-02-12	Add new procedure for composing a gemma cmd	BonfaceKilz
2021-02-12	Add new procedure to return a python dict from a json file	BonfaceKilz
2021-02-12	Add new procedure for looking up files in a given ENV variable	BonfaceKilz
2021-02-12	Add function for computing the hash of a directory	BonfaceKilz