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genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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2021-06-18
db: phenotypes: Fix typo
BonfaceKilz
2021-06-18
db: phenotypes: Add function for fetching a single result
BonfaceKilz
2021-06-18
db: phenotypes: Add a dataclass map
BonfaceKilz
2021-06-18
db: phenotypes: Add Publication table mapping
BonfaceKilz
2021-06-18
db: phenotypes: Rename phenotype_column_mapping
BonfaceKilz
2021-06-18
db: phenotypes: Add Publication dataclass and mapping
BonfaceKilz
2021-06-18
db: phenotypes: Generalise the update function
BonfaceKilz
2021-06-18
db: phenotypes: Map a table to it's relevant dict mapping
BonfaceKilz
2021-06-18
db: phenotypes: Add type for Dataclass
BonfaceKilz
2021-06-18
db: phenotypes: Put mapping def after dataclass
BonfaceKilz
2021-06-18
db: phenotypes: Add phenotype table mapping
BonfaceKilz
2021-06-18
db: phenotypes: Add dataclass to represent PublishXRef
BonfaceKilz
2021-06-18
db: phenotype: Make "pylint: disable=[R0902]" global for file
BonfaceKilz
2021-06-18
db: phenotypes: Add a way of updating the Phenotype table
BonfaceKilz
2021-06-18
Fixed issue where all bool kwargs were always being passed to generate_rqtl_c...
zsloan
2021-06-18
Fix R/qtl command and the way keyword arguments are passed
zsloan
2021-05-25
Include code that processes rqtl output files and returns actual results inst...
zsloan
2021-05-19
Temporarily replace forward-slashes with underscores, since they can be inclu...
zsloan
2021-05-18
Removed len from this if statement, since an empty list evaluates to False by...
zsloan
2021-05-18
Account for boolean kwargs in compute() by storing them in a list, since they...
zsloan
2021-05-18
Account for boolean kwargs in compose_rqtl_cmd
zsloan
2021-05-18
Fixed generate_rqtl_cmd to make the kwarg hash from a combination of keywords...
zsloan
2021-05-18
Fixed variety of issues detected by pylint
zsloan
2021-05-17
Created compose_rqtl_command and generate_rqtl_command to create the actual c...
zsloan
2021-05-17
Read in kwargs fromrequest and pass the command, tmpdir, and kwargs to genera...
zsloan
2021-05-17
Added RQTL_WRAPPER_CMD (which is fetched from environment) in settings.py
zsloan
2021-05-17
Add rqtl.py for rqtl endpoints
zsloan
2021-05-17
Register rqtl blueprint
zsloan
2021-05-15
resolve merge conflict
Alexander Kabui
2021-05-15
Merge branch 'main' into feature/minor-fixes
Alexander Kabui
2021-05-15
index lit tuple result
Alexander Kabui
2021-05-13
Add end-point for running an rQTL program
BonfaceKilz
2021-05-13
Rename file_utils to fs_helpers
BonfaceKilz
2021-05-13
computations: correlations: Apply pep-8
BonfaceKilz
2021-05-12
delete unused functions
Alexander Kabui
2021-05-12
rename lit_correlation_for_trait_list to lit_correlation_for_trait
Alexander Kabui
2021-05-12
rename tissue_correlation_for_trait_list with tissue_correlation_for_trait
Alexander Kabui
2021-05-12
rename p_val ro tissue_p_value for tissue_results
Alexander Kabui
2021-05-10
db: species: Add method for fetching all species
BonfaceKilz
2021-05-08
db: species: Fetch chromosomes using a group or species name
BonfaceKilz
2021-05-08
gn3: db_utils: Remove mypy ignore stub
BonfaceKilz
2021-05-08
Fix pep-8 errors
BonfaceKilz
2021-05-08
db: traits: Add extra method for looking up webqtl datasets
BonfaceKilz
2021-05-08
db: traits: Update method for inserting publication method
BonfaceKilz
2021-05-08
Add method for inserting publication_data
BonfaceKilz
2021-05-08
Add webqtlCaseData DS to keep track of case data in one trait
BonfaceKilz
2021-05-08
Replace namedtuple with a dataclass
BonfaceKilz
2021-05-08
Add method for inserting phenotypes
BonfaceKilz
2021-05-08
Add method for inserting publications
BonfaceKilz
2021-05-08
Add method to fetch riset name and id
BonfaceKilz
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