index
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genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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gn3
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db_utils.py
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Author
2024-06-14
fix: typehints in index-genenetwork script
John Nduli
2024-06-12
refactor: add db_utils global logger that will be the default
John Nduli
2024-06-12
fix: log errors when an exception occurs due to db_utils
John Nduli
2023-09-05
Remove un-necessary ellipsis
Munyoki Kilyungi
2023-08-18
Commit on success, rollback on error.
Frederick Muriuki Muriithi
2023-07-18
Fix wrong import, and typing issues.
Frederick Muriuki Muriithi
2023-04-15
Decouple `gn3.db_utils` from `flask.current_app`.
Frederick Muriuki Muriithi
2023-04-06
Remove deprecated `gn3.db_utils.database_connector` function
Frederick Muriuki Muriithi
2023-04-05
Enable use of `database_connection` in scripts without current_app
Frederick Muriuki Muriithi
2023-03-23
conf: use flask.current_app.config not in gn3.settings
Frederick Muriuki Muriithi
2023-02-23
auth: Link data in MySQL to the groups (in SQLite)
Frederick Muriuki Muriithi
2022-11-02
Fix pylint and mypy errors
Munyoki Kilyungi
2022-10-28
Use Xapian index path from app settings.
Arun Isaac
2022-10-28
Disable various pylint checks on Connection class.
Arun Isaac
2022-10-26
Add xapian database connection context manager.
Arun Isaac
2022-10-18
Add database connection context manager.
Arun Isaac
2022-08-22
Use non-default MySQL port if present
Frederick Muriuki Muriithi
2022-03-11
Fix some linting issues
Frederick Muriuki Muriithi
2022-03-08
Create database connections within context managers
Frederick Muriuki Muriithi
2021-05-08
gn3: db_utils: Remove mypy ignore stub
BonfaceKilz
2021-05-08
Fix pep-8 errors
BonfaceKilz
2021-04-12
Integrate correlation API
Alexander Kabui