genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2023-07-12	Bug: Set the `data_exists` variable within the context manager	Frederick Muriuki Muriithi
2023-07-12	Bug: Retrieve configs from app, not environment	Frederick Muriuki Muriithi
2023-06-15	Fetch genotypes from virtuoso	Munyoki Kilyungi
2023-06-12	Delete unused import	Munyoki Kilyungi
2023-06-12	Fetch phenotypes from virtuoso	Munyoki Kilyungi
2023-06-12	Delete unused get_trait_metadata function	Munyoki Kilyungi
2023-06-07	Add publication end-point	Munyoki Kilyungi
2023-06-07	Nest duplicate entries into a list from a sparql result	Munyoki Kilyungi
2023-06-06	Pass geoSeries as a URL	Munyoki Kilyungi
2023-06-06	Rename gn:geoPlatform -> gn:geoPlatformUrl	Munyoki Kilyungi
2023-06-06	Match how dataset metadata is fetched with GN1	Munyoki Kilyungi
2023-06-06	Replace taxon prefix with ncbiTaxon which references NCBI	Munyoki Kilyungi
2023-06-02	Replace SELECT with CONSTRUCT when fetching a dataset's metadata	Munyoki Kilyungi
2023-06-02	Create a function for stripping the last bit from a URL	Munyoki Kilyungi
2023-05-22	Use string literal concatenation to make genofile_path line shorter	zsloan
2023-05-22	Fix quotes when setting genofile_path	zsloan
2023-05-22	Fix return typing for get_trait_sample_data	zsloan
2023-05-22	Change type from 'any' to 'Any'	zsloan
2023-05-22	Use f-string for setting genofile_path	zsloan
2023-05-22	Include encoding in open statement to address pylint W1514	zsloan
2023-05-22	Initialize 'line'; previous pylint complained because line might not be initi...	zsloan
2023-05-22	Use 'with open()' syntax	zsloan
2023-05-22	Remove unused variable this_data	zsloan
2023-05-22	Include all samples in trait sample data	zsloan
2023-05-22	Fix sample data CSV query to only fetch distinct samples	zsloan
2023-05-22	Fix get_trait_sample_data function	zsloan
2023-05-22	Fix retrieve_sample_list function to correctly get genofile_path	zsloan
2023-05-22	Commit update/insert queries, since they don't seem to be executed otherwise ...	zsloan
2023-05-22	Add function for retrieving group name (given group ID)	zsloan
2023-05-22	Add function for retrieving phenotype sample data as dict	zsloan
2023-05-22	Add function for retrieving samplelist from .geno file	zsloan
2023-04-17	Create new endpoint for fetching GeneRIF entries	Munyoki Kilyungi
2023-03-20	Disable fetching case-attributes when getting sample data	Munyoki Kilyungi
2023-03-17	Add conn.commit() to queries in sample_data.py	zsloan
2023-03-17	Change get_all_species query to order by Family	zsloan
2023-03-01	Open lmdb path in readonly mode	Munyoki Kilyungi
2023-03-01	Fetch trait metadata from RDF	Munyoki Kilyungi
2023-02-06	Get the N-th matrix given N, an index value	Munyoki Kilyungi
2023-02-06	Get total number of versions that a database has	Munyoki Kilyungi
2023-02-06	Add method to fetch the current matrix	Munyoki Kilyungi
2022-12-21	gn3: (gn3.random -> gn3.chancy): Rename module to avoid conflicts.	Frederick Muriuki Muriithi
2022-12-08	Remove unused import	Frederick Muriuki Muriithi
2022-12-06	Use a dataset's name to fetch it's metadata from RDF	Munyoki Kilyungi
2022-11-16	Inject SPARQLWrapper as a parameter	Munyoki Kilyungi
2022-11-02	Re-implement RDF related code to use monads in its own module	Munyoki Kilyungi
2022-11-02	Fix pylint and mypy errors	Munyoki Kilyungi
2022-08-23	Remove conn.commit() and conn.rollback()	Munyoki Kilyungi
2022-06-21	Replace lint code with human-readable text	BonfaceKilz
2022-06-21	db: correlations: Ignore pylint error	BonfaceKilz
2022-06-21	db: correlations: Ignore types	BonfaceKilz