genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2023-07-21	Update a Publication in the database.	Frederick Muriuki Muriithi
2023-07-21	Fetch a publication by its PubMed ID	Frederick Muriuki Muriithi
2023-07-21	Rename function: fetch_publication ==> fetch_publication_by_id	Frederick Muriuki Muriithi
2023-07-19	Extract code dealing with ProbeSets to their own module.	Frederick Muriuki Muriithi
2023-07-19	Extract reusable code to separate module	Frederick Muriuki Muriithi
2023-07-18	Bug: Change from `_id` to `id_` to avoid downstream breakage.	Frederick Muriuki Muriithi
2023-07-18	Fix wrong import, and typing issues.	Frederick Muriuki Muriithi
2023-07-18	Fetch a single publication by `PublicationId`	Frederick Muriuki Muriithi
2023-07-18	Fetch metadata for a single phenotype.	Frederick Muriuki Muriithi
2023-07-18	Fetch single phenotype trait by `dataset_id` and `trait_name`.	Frederick Muriuki Muriithi
2023-07-18	Bug: Fetch group name by dataset_id	Frederick Muriuki Muriithi
2023-07-17	Fix dict key name	Frederick Muriuki Muriithi
2023-07-12	Bug: Set the `data_exists` variable within the context manager	Frederick Muriuki Muriithi
2023-07-12	Bug: Retrieve configs from app, not environment	Frederick Muriuki Muriithi
2023-06-15	Fetch genotypes from virtuoso	Munyoki Kilyungi
2023-06-12	Delete unused import	Munyoki Kilyungi
2023-06-12	Fetch phenotypes from virtuoso	Munyoki Kilyungi
2023-06-12	Delete unused get_trait_metadata function	Munyoki Kilyungi
2023-06-07	Add publication end-point	Munyoki Kilyungi
2023-06-07	Nest duplicate entries into a list from a sparql result	Munyoki Kilyungi
2023-06-06	Pass geoSeries as a URL	Munyoki Kilyungi
2023-06-06	Rename gn:geoPlatform -> gn:geoPlatformUrl	Munyoki Kilyungi
2023-06-06	Match how dataset metadata is fetched with GN1	Munyoki Kilyungi
2023-06-06	Replace taxon prefix with ncbiTaxon which references NCBI	Munyoki Kilyungi
2023-06-02	Replace SELECT with CONSTRUCT when fetching a dataset's metadata	Munyoki Kilyungi
2023-06-02	Create a function for stripping the last bit from a URL	Munyoki Kilyungi
2023-05-22	Use string literal concatenation to make genofile_path line shorter	zsloan
2023-05-22	Fix quotes when setting genofile_path	zsloan
2023-05-22	Fix return typing for get_trait_sample_data	zsloan
2023-05-22	Change type from 'any' to 'Any'	zsloan
2023-05-22	Use f-string for setting genofile_path	zsloan
2023-05-22	Include encoding in open statement to address pylint W1514	zsloan
2023-05-22	Initialize 'line'; previous pylint complained because line might not be initi...	zsloan
2023-05-22	Use 'with open()' syntax	zsloan
2023-05-22	Remove unused variable this_data	zsloan
2023-05-22	Include all samples in trait sample data	zsloan
2023-05-22	Fix sample data CSV query to only fetch distinct samples	zsloan
2023-05-22	Fix get_trait_sample_data function	zsloan
2023-05-22	Fix retrieve_sample_list function to correctly get genofile_path	zsloan
2023-05-22	Commit update/insert queries, since they don't seem to be executed otherwise ...	zsloan
2023-05-22	Add function for retrieving group name (given group ID)	zsloan
2023-05-22	Add function for retrieving phenotype sample data as dict	zsloan
2023-05-22	Add function for retrieving samplelist from .geno file	zsloan
2023-04-17	Create new endpoint for fetching GeneRIF entries	Munyoki Kilyungi
2023-03-20	Disable fetching case-attributes when getting sample data	Munyoki Kilyungi
2023-03-17	Add conn.commit() to queries in sample_data.py	zsloan
2023-03-17	Change get_all_species query to order by Family	zsloan
2023-03-01	Open lmdb path in readonly mode	Munyoki Kilyungi
2023-03-01	Fetch trait metadata from RDF	Munyoki Kilyungi
2023-02-06	Get the N-th matrix given N, an index value	Munyoki Kilyungi