genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2023-05-22	Fix retrieve_sample_list function to correctly get genofile_path	zsloan
2023-05-22	Commit update/insert queries, since they don't seem to be executed otherwise ...	zsloan
2023-05-22	Add function for retrieving group name (given group ID)	zsloan
2023-05-22	Add function for retrieving phenotype sample data as dict	zsloan
2023-05-22	Add function for retrieving samplelist from .geno file	zsloan
2023-04-17	Create new endpoint for fetching GeneRIF entries	Munyoki Kilyungi
2023-03-20	Disable fetching case-attributes when getting sample data	Munyoki Kilyungi
2023-03-17	Add conn.commit() to queries in sample_data.py	zsloan
2023-03-17	Change get_all_species query to order by Family	zsloan
2023-03-01	Open lmdb path in readonly mode	Munyoki Kilyungi
2023-03-01	Fetch trait metadata from RDF	Munyoki Kilyungi
2023-02-06	Get the N-th matrix given N, an index value	Munyoki Kilyungi
2023-02-06	Get total number of versions that a database has	Munyoki Kilyungi
2023-02-06	Add method to fetch the current matrix	Munyoki Kilyungi
2022-12-21	gn3: (gn3.random -> gn3.chancy): Rename module to avoid conflicts.	Frederick Muriuki Muriithi
2022-12-08	Remove unused import	Frederick Muriuki Muriithi
2022-12-06	Use a dataset's name to fetch it's metadata from RDF	Munyoki Kilyungi
2022-11-16	Inject SPARQLWrapper as a parameter	Munyoki Kilyungi
2022-11-02	Re-implement RDF related code to use monads in its own module	Munyoki Kilyungi
2022-11-02	Fix pylint and mypy errors	Munyoki Kilyungi
2022-08-23	Remove conn.commit() and conn.rollback()	Munyoki Kilyungi
2022-06-21	Replace lint code with human-readable text	BonfaceKilz
2022-06-21	db: correlations: Ignore pylint error	BonfaceKilz
2022-06-21	db: correlations: Ignore types	BonfaceKilz
2022-06-21	db: datasets.py: Ignore results from sparql.queryAndConvert	BonfaceKilz
2022-05-31	Extract utility functions from `fetch_all_database_data`	Frederick Muriuki Muriithi
2022-05-27	Move sql for CRUD operations on case-attrs from gn2 to gn3	BonfaceKilz
2022-05-27	Move sql for modifying case-attributes from gn2 to gn3	BonfaceKilz
2022-05-27	Return all the results from CaseAttributes column as is	BonfaceKilz
2022-05-26	Add Endpoint to get menu items for use in UI	Frederick Muriuki Muriithi
2022-05-06	Fix linting and typing errors	Frederick Muriuki Muriithi
2022-05-05	Compute partial correlation with selected traits	Frederick Muriuki Muriithi
2022-04-12	Strip any newline, tab or carriage-return chars from sample data	BonfaceKilz
2022-04-07	Fix pylint errors	BonfaceKilz
2022-04-07	Use case attribute id inside brackets if present during insertions	BonfaceKilz
2022-04-07	Use case attribute id inside brackets if present during insertions	BonfaceKilz
2022-04-07	Use case attribute id inside brackets if present during updates	BonfaceKilz
2022-04-07	Add method for fetching the case_attributes	BonfaceKilz
2022-04-07	Run python black on file	BonfaceKilz
2022-03-14	Dummy White Space commit to fix laminar	BonfaceKilz
2022-03-12	Remove unused imports	BonfaceKilz
2022-03-12	Fix mypy issues	BonfaceKilz
2022-03-12	Fix pylint issues	BonfaceKilz
2022-03-12	Store the first element as strain_id	BonfaceKilz
2022-03-12	Append the strain name when extracting "actions"	BonfaceKilz
2022-03-12	Apply auto-pep8 to sample_data.py and it's test file	BonfaceKilz
2022-03-12	Add missing return type-annotations	BonfaceKilz
2022-03-12	Update how data is updated by re-using existing functions	BonfaceKilz
2022-03-12	Create action dict that's created when updating data	BonfaceKilz
2022-03-12	Remove check for inserted data when inserting individual data	BonfaceKilz