index
:
genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
about
summary
refs
log
tree
commit
diff
log msg
author
committer
range
path:
root
/
gn3
/
db
Age
Commit message (
Expand
)
Author
2024-09-11
Fix mypy errors.
Munyoki Kilyungi
2024-09-11
Run python-black against file.
Munyoki Kilyungi
2024-09-11
Move comment on the manual sort to the doc-string.
Munyoki Kilyungi
2024-09-11
Abstract out sanitizing json-ld result into a function.
Munyoki Kilyungi
2024-09-11
Update RDF queries to match ADR/000/gn-transform-databases.
Munyoki Kilyungi
2024-09-05
Update comment explaining why CONSTRUCT doesn't respect ORDER BY.
Munyoki Kilyungi
2024-09-05
Correctly get categories in response.
Munyoki Kilyungi
2024-09-05
Sort the RIF history data in reverse order.
Munyoki Kilyungi
2024-09-05
Enforce array type to "categories" and "pmids" fields.
Munyoki Kilyungi
2024-09-05
Set OPTIONAL values to default to an empty string.
Munyoki Kilyungi
2024-09-05
Rename "pubmed_id" -> "pubmed_ids" to be explicit it's an array.
Munyoki Kilyungi
2024-09-05
Remove type from wiki history.
Munyoki Kilyungi
2024-09-05
Fix type error.
Munyoki Kilyungi
2024-09-05
Add comment history.
Munyoki Kilyungi
2024-09-05
Always output the top-level graph when compacting.
Munyoki Kilyungi
2024-09-05
Use correct prefix when querying for email in triple.
Munyoki Kilyungi
2024-09-05
Create global wiki context usable by all functions in gn3.rdf.wiki
Munyoki Kilyungi
2024-09-05
Add missing doc-strings to make pylint pass.
Munyoki Kilyungi
2024-09-05
Restructure RDF module.
Munyoki Kilyungi
2024-08-29
chore: pylint docstring
John Nduli
2024-08-29
feat: add api calls to get categories and last comment
John Nduli
2024-08-29
Remove "@id" re-map in the json-ld base context.
Munyoki Kilyungi
2024-08-29
Fetch the latest comment by the versionId.
Munyoki Kilyungi
2024-08-29
Make fetching wiki entries by symbol case insensitive.
Munyoki Kilyungi
2024-08-29
Add "created" to wiki return.
Munyoki Kilyungi
2024-08-26
Fix pylint errors.
Munyoki Kilyungi
2024-08-26
If there's no data, return a 404.
Munyoki Kilyungi
2024-08-26
Replace map with list comprehension.
Munyoki Kilyungi
2024-08-26
Fetch all the wiki entries by symbol.
Munyoki Kilyungi
2024-08-26
Move constants to their own file.
Munyoki Kilyungi
2024-08-26
chore: fix pylint errors
John Nduli
2024-08-26
refactor: split out utlities into their modules and change api to use metadata
John Nduli
2024-04-30
Add an endpoint to query a dataset's git history from it's id.
Munyoki Kilyungi
2024-04-30
Add a method for saving a dataset's metadata to git.
Munyoki Kilyungi
2024-04-30
Rename retrieve_dataset_metadata to retrieve_metadata.
Munyoki Kilyungi
2024-04-30
Remove an f-string that doesn't have any interpolated variables.
Munyoki Kilyungi
2024-04-29
Prevent error when group isn't in parents/f1s JSON file
zsloan
2024-04-11
Include parents/f1s in default samplelist + add boolean options for them
zsloan
2024-02-25
Construct genofile_path using pathlib module.
Munyoki Kilyungi
2024-02-15
Use correct names for dataset entries in json result.
Munyoki Kilyungi
2024-02-13
Fetch extra metadata from text-files when fetching datasets.
Munyoki Kilyungi
2024-02-13
Retrieve metadata from text files given a path.
Munyoki Kilyungi
2023-10-27
Fix pylint error.
Munyoki Kilyungi
2023-10-27
Add functions that wrap around the common jsonld patterns.
Munyoki Kilyungi
2023-10-27
Break up long line.
Munyoki Kilyungi
2023-10-27
Ignore construct result for mypy compliance
Munyoki Kilyungi
2023-10-27
Abstract out (sparql) CONSTRUCT into a function.
Munyoki Kilyungi
2023-10-27
Delete gn3.db.rdf.sparql_query.
Munyoki Kilyungi
2023-10-27
Delete db.rdf.get_url_local_name.
Munyoki Kilyungi
2023-10-27
Implement "GET /metadata/phenotypes/:name".
Munyoki Kilyungi
[next]