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path: root/gn3/db/sample_data.py
AgeCommit message (Expand)Author
2023-08-17Make several sample_data fetching functions specific to phenotype or mrna ass...zsloan
2023-07-17Fix dict key nameFrederick Muriuki Muriithi
2023-07-12Bug: Set the `data_exists` variable within the context managerFrederick Muriuki Muriithi
2023-05-22Fix return typing for get_trait_sample_datazsloan
2023-05-22Remove unused variable this_datazsloan
2023-05-22Include all samples in trait sample datazsloan
2023-05-22Fix sample data CSV query to only fetch distinct sampleszsloan
2023-05-22Fix get_trait_sample_data functionzsloan
2023-05-22Add function for retrieving phenotype sample data as dictzsloan
2023-03-20Disable fetching case-attributes when getting sample dataMunyoki Kilyungi
2023-03-17Add conn.commit() to queries in sample_data.pyzsloan
2022-11-02Fix pylint and mypy errorsMunyoki Kilyungi
2022-08-23Remove conn.commit() and conn.rollback()Munyoki Kilyungi
2022-05-27Move sql for modifying case-attributes from gn2 to gn3BonfaceKilz
2022-05-27Return all the results from CaseAttributes column as isBonfaceKilz
2022-04-12Strip any newline, tab or carriage-return chars from sample dataBonfaceKilz
2022-04-07Fix pylint errorsBonfaceKilz
2022-04-07Use case attribute id inside brackets if present during insertionsBonfaceKilz
2022-04-07Use case attribute id inside brackets if present during insertionsBonfaceKilz
2022-04-07Use case attribute id inside brackets if present during updatesBonfaceKilz
2022-04-07Add method for fetching the case_attributesBonfaceKilz
2022-04-07Run python black on fileBonfaceKilz
2022-03-14Dummy White Space commit to fix laminarBonfaceKilz
2022-03-12Fix mypy issuesBonfaceKilz
2022-03-12Fix pylint issuesBonfaceKilz
2022-03-12Store the first element as strain_idBonfaceKilz
2022-03-12Append the strain name when extracting "actions"BonfaceKilz
2022-03-12Apply auto-pep8 to sample_data.py and it's test fileBonfaceKilz
2022-03-12Add missing return type-annotationsBonfaceKilz
2022-03-12Update how data is updated by re-using existing functionsBonfaceKilz
2022-03-12Create action dict that's created when updating dataBonfaceKilz
2022-03-12Remove check for inserted data when inserting individual dataBonfaceKilz
2022-03-12Make `_map` a constantBonfaceKilz
2022-03-12Fix faulty SQL query string when deleting case-attributesBonfaceKilz
2022-03-12Explicitly get CaseAttributeId and fix broken sql queryBonfaceKilz
2022-03-12Remove duplicate paramsBonfaceKilz
2022-03-12Remove dead codeBonfaceKilz
2022-03-12Check whether publish data already exists before insertingBonfaceKilz
2022-03-12Fetch id's separately for the insertion edge-caseBonfaceKilz
2022-03-12Extract a strain name given a csv string and it's headerBonfaceKilz
2022-03-12Allow deleting case-attribute data during deletionBonfaceKilz
2022-03-12Allow inserting case-attribute data during insertsBonfaceKilz
2022-03-12Fetch InbredSetIdBonfaceKilz
2022-03-12Create a new function for retrieving strain_id and publishdata_idBonfaceKilz
2022-03-12Move operations on sample_data to it's own moduleBonfaceKilz