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genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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gn3
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datasets.py
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2024-04-30
Add an endpoint to query a dataset's git history from it's id.
Munyoki Kilyungi
2024-04-30
Add a method for saving a dataset's metadata to git.
Munyoki Kilyungi
2024-04-30
Rename retrieve_dataset_metadata to retrieve_metadata.
Munyoki Kilyungi
2024-04-30
Remove an f-string that doesn't have any interpolated variables.
Munyoki Kilyungi
2024-04-29
Prevent error when group isn't in parents/f1s JSON file
zsloan
2024-04-11
Include parents/f1s in default samplelist + add boolean options for them
zsloan
2024-02-25
Construct genofile_path using pathlib module.
Munyoki Kilyungi
2024-02-15
Use correct names for dataset entries in json result.
Munyoki Kilyungi
2024-02-13
Fetch extra metadata from text-files when fetching datasets.
Munyoki Kilyungi
2024-02-13
Retrieve metadata from text files given a path.
Munyoki Kilyungi
2023-08-17
Fix queries for fetching group names
zsloan
2023-08-17
Fix query for retrieving mrna dataset group name
zsloan
2023-08-17
Fix mrna group name query
zsloan
2023-08-17
Add function for retrieving mRNA Assay group name
zsloan
2023-07-18
Bug: Fetch group name by dataset_id
Frederick Muriuki Muriithi
2023-07-12
Bug: Retrieve configs from app, not environment
Frederick Muriuki Muriithi
2023-05-22
Use string literal concatenation to make genofile_path line shorter
zsloan
2023-05-22
Fix quotes when setting genofile_path
zsloan
2023-05-22
Change type from 'any' to 'Any'
zsloan
2023-05-22
Use f-string for setting genofile_path
zsloan
2023-05-22
Include encoding in open statement to address pylint W1514
zsloan
2023-05-22
Initialize 'line'; previous pylint complained because line might not be initi...
zsloan
2023-05-22
Use 'with open()' syntax
zsloan
2023-05-22
Fix retrieve_sample_list function to correctly get genofile_path
zsloan
2023-05-22
Add function for retrieving group name (given group ID)
zsloan
2023-05-22
Add function for retrieving samplelist from .geno file
zsloan
2022-11-02
Re-implement RDF related code to use monads in its own module
Munyoki Kilyungi
2022-06-21
db: datasets.py: Ignore results from sparql.queryAndConvert
BonfaceKilz
2022-02-21
Fix a myriad of linter issues
Frederick Muriuki Muriithi
2022-02-18
Remove code trying to query non-existent `TempFreeze` table
Frederick Muriuki Muriithi
2021-12-23
db: Assist mypy with explicit type declaration.
Arun Isaac
2021-12-23
db: Fix sparql_query return type.
Arun Isaac
2021-12-23
db: Fix wrong continued indentation.
Arun Isaac
2021-12-09
Prevent error on no result. Fix indexing
Frederick Muriuki Muriithi
2021-12-02
Implement dataset metadata API endpoint.
Arun Isaac
2021-09-27
Update terminology: `riset` to `group`
Frederick Muriuki Muriithi
2021-08-17
Fix errors: add in missing parenthesis
Muriithi Frederick Muriuki
2021-08-09
Fix linting errors
Muriithi Frederick Muriuki
2021-08-05
Reorganise the database code
Muriithi Frederick Muriuki
