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path: root/gn3/computations/rqtl2.py
AgeCommit message (Expand)Author
2025-03-27feat: Check for founder and covar file in rqtl2 metadata.Alexander_Kabui
2025-03-07refactor function to process scan1 results.Alexander_Kabui
2025-02-28Fix linting errors.Frederick Muriuki Muriithi
2025-02-25fix: handle extra columns in permutations CSV reader to prevent unpacking error.Alexander_Kabui
2025-02-24Fetch rscript from os env if it isn't set in the app's config.Munyoki Kilyungi
2025-02-20refactor: Skip permutation test when NO_OF_PERMUTATION less than 0.Alexander_Kabui
2025-02-19fix: Read and parse correct permutation file from R/qtl2.Alexander_Kabui
2025-02-07refactor: Add rqtl2 default method and update unittests.Alexander_Kabui
2025-02-07feat: Add the qtl to method to be used.Alexander_Kabui
2025-02-07fix: fix for fetching significance results.Alexander_Kabui
2025-02-06feat: Include the physical map position in results.Alexander_Kabui
2025-02-06refactor: Rename pheno_map to physical_map .Alexander_Kabui
2025-02-06mypy fixes.Alexander_Kabui
2025-02-06refactor process qtl2 results function to include output reading.Alexander_Kabui
2025-02-06feat: Add function to process qtl2 output results.Alexander_Kabui
2025-02-06feat: Add function to process qtl scan results.Alexander_Kabui
2025-02-06feat: Add function to process permutation results.Alexander_Kabui
2025-02-06feat: Add function to fetch significance results.Alexander_Kabui
2025-02-06Refactor: return the relative file to the workspace directory.Alexander_Kabui
2025-02-06Refactor workspace directory creation to use pathlib's mkdir method.Alexander_Kabui
2025-02-06refactor: Minor cleanup.Alexander_Kabui
2025-02-06refactor: Add file_path to output only if it is created.Alexander_Kabui
2025-02-06refactor: Check if data before attempting write operation.Alexander_Kabui
2025-02-06feat: Add module docstring for rqtl2 computations.Alexander_Kabui
2025-02-06refactor: remove unused imports.Alexander_Kabui
2025-02-06feat: Add function to write input data to a json file.Alexander_Kabui
2025-02-06feat: Add function to prepare files and workspace directory for computation.Alexander_Kabui
2025-02-06feat: Add utility function to create a file if it does not exist.Alexander_Kabui
2025-02-06feat: Add function to compose an rqtl2 run command.Alexander_Kabui
2025-02-06feat: Add function to validate list of keys in object.Alexander_Kabui
2025-02-06feat: Add function to generate rqtl2 data files.Alexander_Kabui
2025-02-06feat: Add method to write list of data to csv file.Alexander_Kabui
2025-02-06feat: Add computational module for rqtl2.Alexander_Kabui
generated by cgit-pink 1.4.1 (git 2.36.1) at 2025-11-22 01:44:10 +0000