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path: root/gn3/computations/rqtl.py
AgeCommit message (Expand)Author
2024-09-12From gn3 only use TMPDIR/gn3 pathsPjotr Prins
2024-09-12Replace TMPDIR/output with TMPDIR/gn3 so it is clear where it comes fromPjotr Prins
2024-09-12Make sure TMPDIR directories exist!Pjotr Prins
2024-09-12Getting Rqtl to run on fallbackPjotr Prins
2023-01-25Some commentsPjotr Prins
2022-03-23Run python-black on file and fix other pylint issues.BonfaceKilz
2022-03-22Fixes pylint errorszsloan
2022-03-22Fixed mypy typing errorszsloan
2022-03-22Tried to make the docstrings more consistentzsloan
2022-03-22Add typing to some functionszsloan
2022-03-22Add functions for getting proximal/distal markers for each pseudomarker posit...zsloan
2022-03-22Added genofile name to inputs for processing R/qtl pair-scan results, since i...zsloan
2022-03-22Removed quotes from beginning and end of chromosome stringzsloan
2022-03-22Fixed a cople function calls to use the updated function nameszsloan
2022-03-22Create pairscan_for_figure and pairscan_for_table functions that return the D...zsloan
2022-03-22Added pairscan boolean kwarg and process_rqtl_pairscan function for reading i...zsloan
2022-02-24gn3: Explicitly specify UTF-8 to be the file encoding.Arun Isaac
2021-06-18Fixed pylint issueszsloan
2021-06-18Resolve mypy errors in computations/rqtl.pyzsloan
2021-05-25Include code that processes rqtl output files and returns actual results inst...zsloan
2021-05-19Temporarily replace forward-slashes with underscores, since they can be inclu...zsloan
2021-05-18Fixed generate_rqtl_cmd to make the kwarg hash from a combination of keywords...zsloan
2021-05-18Fixed variety of issues detected by pylintzsloan
2021-05-17Created compose_rqtl_command and generate_rqtl_command to create the actual c...zsloan
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