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path: root/gn3/computations/gemma.py
AgeCommit message (Expand)Author
2024-09-12Fix pylint errors.Munyoki Kilyungi
2024-09-12From gn3 only use TMPDIR/gn3 pathsPjotr Prins
2024-09-12Move assert_paths_exist into fs_helpersPjotr Prins
2024-09-12Change behavior of do_paths_exist to actually throw useful errorPjotr Prins
2024-09-12Move assert_paths_exist into fs_helpersPjotr Prins
2024-09-12Change behavior of do_paths_exist to actually throw useful errorPjotr Prins
2023-10-27Remove reimport "Optional".Munyoki Kilyungi
2023-10-27Make implicit optional type hints PEP 484 compliant.Munyoki Kilyungi
2023-10-26Fix errors caught by mypy.Frederick Muriuki Muriithi
2022-02-24gn3: Explicitly specify UTF-8 to be the file encoding.Arun Isaac
2021-05-13Rename file_utils to fs_helpersBonfaceKilz
2021-03-10Fix k-compute command when "loco" is trueBonfaceKilz
2021-03-08Remove unused importsBonfaceKilz
2021-03-08Delete "generate_gemma_computation_cmd"BonfaceKilz
2021-03-08Add generic fn for computing k and gwa valuesBonfaceKilz
2021-03-08Apply pep-8 formattingBonfaceKilz
2021-03-08Move "generate_random_n_string" to file_utilsBonfaceKilz
2021-03-08Fix failing testsBonfaceKilz
2021-02-24Create a new helper function for generating k_values and GWABonfaceKilz
2021-02-24Add procedure that checks whether a list of paths existBonfaceKilz
2021-02-24Check if phenotype exists before creating oneBonfaceKilz
2021-02-24Add new procedure that computes the hash of an array of stringsBonfaceKilz
2021-02-24Add mypy-typing to functionBonfaceKilz
2021-02-24Append random 6 chars to generated phenotype fileBonfaceKilz
2021-02-24Create a new method for generating a valid phenotype file on the flyBonfaceKilz