index
:
genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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Author
2021-05-17
Register rqtl blueprint
zsloan
2021-05-17
Merge pull request #11 from genenetwork/feature/minor-fixes
...
Feature/minor fixes
BonfaceKilz
2021-05-15
resolve merge conflict
Alexander Kabui
2021-05-15
Merge branch 'main' into feature/minor-fixes
Alexander Kabui
2021-05-15
index lit tuple result
Alexander Kabui
2021-05-14
README
Pjotr Prins
2021-05-13
tests: test_general: Add test case for run_r_qtl endpoint
BonfaceKilz
2021-05-13
Add end-point for running an rQTL program
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* gn3/api/general.py (run_r_qtl): New function. * gn3/settings.py: New variable.
BonfaceKilz
2021-05-13
Rename file_utils to fs_helpers
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Generally avoid naming things with a "utils" prefix/ suffix since it encourages contributors to dump any new functions there; and over time, as the code grows, things get messy...
BonfaceKilz
2021-05-13
computations: correlations: Apply pep-8
BonfaceKilz
2021-05-12
delete unused functions
Alexander Kabui
2021-05-12
rename lit_correlation_for_trait_list to lit_correlation_for_trait
Alexander Kabui
2021-05-12
rename tissue_correlation_for_trait_list with tissue_correlation_for_trait
Alexander Kabui
2021-05-12
rename p_val ro tissue_p_value for tissue_results
Alexander Kabui
2021-05-10
tests: test_species: Add test for `get_all_species`
BonfaceKilz
2021-05-10
db: species: Add method for fetching all species
BonfaceKilz
2021-05-10
tests: test_gemma: Add TMPDIR to test_client()
BonfaceKilz
2021-05-10
setup.py: Add gn3.api to packages
BonfaceKilz
2021-05-10
setup.py: Remove gn3.utility from packages
BonfaceKilz
2021-05-10
guix.scm: Add missing comma in propagated-input
BonfaceKilz
2021-05-08
guix.scm: Add python-numpy and python-requests
BonfaceKilz
2021-05-08
setup.py: Create basic setup file
BonfaceKilz
2021-05-08
Fix typo
BonfaceKilz
2021-05-08
tests: test_species: New tests
BonfaceKilz
2021-05-08
db: species: Fetch chromosomes using a group or species name
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* gn3/db/species.py (get_chromosome): New function.
BonfaceKilz
2021-05-08
gn3: db_utils: Remove mypy ignore stub
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MySQLdb is already ignored in ".mypy.ini", added in 88c33df.
BonfaceKilz
2021-05-08
Ignore missing stub imports from MySQLdb
BonfaceKilz
2021-05-08
Fix pep-8 errors
BonfaceKilz
2021-05-08
db: traits: Add extra method for looking up webqtl datasets
BonfaceKilz
2021-05-08
db: traits: Update method for inserting publication method
BonfaceKilz
2021-05-08
Add method for inserting publication_data
BonfaceKilz
2021-05-08
Add webqtlCaseData DS to keep track of case data in one trait
BonfaceKilz
2021-05-08
Replace namedtuple with a dataclass
BonfaceKilz
2021-05-08
Add method for inserting phenotypes
BonfaceKilz
2021-05-08
Add method for inserting publications
BonfaceKilz
2021-05-08
Add method to fetch riset name and id
BonfaceKilz
2021-05-08
Add endpoints for (batch) entering phenotypes and genotypes
BonfaceKilz
2021-05-08
Add issue and PR templates
BonfaceKilz
2021-05-08
Add extra procedure for parsing a genotype file
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* gn3/computations/parsers.py (parse_genofile): New procedure. * tests/unit/computations/test_parsers.py: New test files for above.
BonfaceKilz
2021-05-08
Add extra genotype test file
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* tests/unit/test_data/genotype.txt: New file. * tests/unit/test_file_utils.py: Update failing test.
BonfaceKilz
2021-05-08
Add python-mysqlclient as a dependency
BonfaceKilz
2021-05-05
Merge pull request #9 from genenetwork/Feature/speed-up-correlation
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Feature/speed up correlation
BonfaceKilz
2021-05-03
add default no of cores
Alexander Kabui
2021-05-03
modify default SQL_URI
Alexander Kabui
2021-05-03
add trait_id fix mypy issues
Alexander Kabui
2021-05-03
minor fixes for tiss correlation tests and naming
Alexander Kabui
2021-05-03
replace database with conn
Alexander Kabui
2021-05-02
remove trait and dataset blueprint
Alexander Kabui
2021-05-02
delete dataset and trait files
Alexander Kabui
2021-04-20
pep8 formatting
Alexander Kabui
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