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| author | Alexander Kabui | 2021-05-12 19:52:21 +0300 |
|---|---|---|
| committer | Alexander Kabui | 2021-05-12 19:52:21 +0300 |
| commit | 9215c0d412bd885db3c3bbcb5635c22ac932b6f4 (patch) | |
| tree | 9fa10dec7551169ebea7059caadfa372f53e3cba | |
| parent | f88a2c3161c71d58c91c3030bd303a86846c5a73 (diff) | |
| download | genenetwork3-9215c0d412bd885db3c3bbcb5635c22ac932b6f4.tar.gz | |
rename lit_correlation_for_trait_list to lit_correlation_for_trait
| -rw-r--r-- | gn3/computations/correlations.py | 6 | ||||
| -rw-r--r-- | tests/unit/computations/test_correlation.py | 10 |
2 files changed, 8 insertions, 8 deletions
diff --git a/gn3/computations/correlations.py b/gn3/computations/correlations.py index 21bc82e..2a4854b 100644 --- a/gn3/computations/correlations.py +++ b/gn3/computations/correlations.py @@ -287,7 +287,7 @@ def fetch_lit_correlation_data( return (gene_id, 0) -def lit_correlation_for_trait_list( +def lit_correlation_for_trait( conn, target_trait_lists: List, species: Optional[str] = None, @@ -361,9 +361,9 @@ def map_to_mouse_gene_id(conn, species: Optional[str], def compute_all_lit_correlation(conn, trait_lists: List, species: str, gene_id): """Function that acts as an abstraction for - lit_correlation_for_trait_list""" + lit_correlation_for_trait""" - lit_results = lit_correlation_for_trait_list( + lit_results = lit_correlation_for_trait( conn=conn, target_trait_lists=trait_lists, species=species, diff --git a/tests/unit/computations/test_correlation.py b/tests/unit/computations/test_correlation.py index e6bc280..8bf5b37 100644 --- a/tests/unit/computations/test_correlation.py +++ b/tests/unit/computations/test_correlation.py @@ -12,7 +12,7 @@ from gn3.computations.correlations import compute_all_sample_correlation from gn3.computations.correlations import filter_shared_sample_keys from gn3.computations.correlations import tissue_lit_corr_for_probe_type from gn3.computations.correlations import tissue_correlation_for_trait -from gn3.computations.correlations import lit_correlation_for_trait_list +from gn3.computations.correlations import lit_correlation_for_trait from gn3.computations.correlations import fetch_lit_correlation_data from gn3.computations.correlations import query_formatter from gn3.computations.correlations import map_to_mouse_gene_id @@ -246,7 +246,7 @@ class TestCorrelation(TestCase): @mock.patch("gn3.computations.correlations.fetch_lit_correlation_data") @mock.patch("gn3.computations.correlations.map_to_mouse_gene_id") - def test_lit_correlation_for_trait_list(self, mock_mouse_gene_id, fetch_lit_data): + def test_lit_correlation_for_trait(self, mock_mouse_gene_id, fetch_lit_data): """Fetch results from db call for lit correlation given a trait list\ after doing correlation """ @@ -260,7 +260,7 @@ class TestCorrelation(TestCase): fetch_lit_data.side_effect = [(15, 9), (17, 8), (11, 12)] - lit_results = lit_correlation_for_trait_list( + lit_results = lit_correlation_for_trait( conn=conn, target_trait_lists=target_trait_lists, species="rat", trait_gene_id="12") @@ -375,10 +375,10 @@ class TestCorrelation(TestCase): self.assertEqual(results, expected_results) - @mock.patch("gn3.computations.correlations.lit_correlation_for_trait_list") + @mock.patch("gn3.computations.correlations.lit_correlation_for_trait") def test_compute_all_lit_correlation(self, mock_lit_corr): """Test for compute all lit correlation which acts\ - as an abstraction for lit_correlation_for_trait_list + as an abstraction for lit_correlation_for_trait and is used in the api/correlation/lit """ |