| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2025-06-17 | Add function for retrieving group_id given group_name | zsloan | |
| 2025-04-30 | Revert commit dd9ef90ee89e5c075acbd5ef63cb89518e726ca3. | Alexander_Kabui | |
| 2025-04-30 | refactor: For genetic probabilites use cores 0 to use all | Alexander_Kabui | |
| available of no cores detected. | |||
| 2025-04-30 | Disable log-in for wiki edits. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-25 | Handle null species in wiki comment query | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-25 | Return a zero when the species is unspecified. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-25 | Skip adding a species to RDF when the species is unspecified. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-24 | Add "**kwargs" to delete_wiki to make @require_token to work. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-24 | Remove early return in delete_wiki to complete query execution. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Fix pylint errors. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Implement delete_wiki API endpoint. | Munyoki Kilyungi | |
| * gn3/api/metadata_api/wiki.py: Import delete_wiki_entries_by_id. (delete_wiki): New API endpoint. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Add function to delete wiki entries by wiki_id. | Munyoki Kilyungi | |
| * delete_wiki_entries_by_id: New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Add test case for deleting wiki data. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Correctly ignore broad-expection-raised exceptions. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Autopep-8 file. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | sheepdog/worker.py: Fix logging-fstring-interpolation warning. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Auto-pep8 files. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-22 | Reduce arguments in run_async_cmd by using options dictionary. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-04-14 | Include effect mean/SE for 4-way crosses in R/qtl results | zsloan | |
| 2025-04-09 | Initialise the sheepdog package to ensure the worker gets installed. | Frederick Muriuki Muriithi | |
| 2025-04-08 | Fix failing test. | Frederick Muriuki Muriithi | |
| 2025-04-08 | Pass application log-level to the worker. | Frederick Muriuki Muriithi | |
| 2025-04-08 | Use computed job queue to avoid collisions. | Frederick Muriuki Muriithi | |
| 2025-04-08 | Add a function to compute the job queue from the settings. | Frederick Muriuki Muriithi | |
| 2025-04-08 | APPLICATION_ENVIRONMENT: New configuration variable | Frederick Muriuki Muriithi | |
| Add a new application configuration variable, "APPLICATION_ENVIRONMENT" that will be useful to distinguish resources for different instances of the application that might run on the same host. The default value is an empty string in order to allow backwards compatibility with existing code. An example of where this finds utility: If you run multiple instances of the application, but they all share the same redis instance, then key-collisions from the different running applications will happen, leading to subtle, difficult to troubleshoot bugs. | |||
| 2025-04-08 | Add logging to worker. | Frederick Muriuki Muriithi | |
| 2025-04-08 | sheepdog.worker: Pass in the queue name on the CLI | Frederick Muriuki Muriithi | |
| Pass in the name of the queue where the jobs are queued to the worker. | |||
| 2025-04-08 | BUG: Provide a tuple, of tuple of floats | Frederick Muriuki Muriithi | |
| The downstream functions seem to expect a tuple of tuples of floats. | |||
| 2025-04-08 | Use correct key. | Frederick Muriuki Muriithi | |
| 2025-04-08 | Indent code properly. | Frederick Muriuki Muriithi | |
| 2025-04-08 | refactor: Explicity define no of cores for rqtl2 computation. | Alexander_Kabui | |
| 2025-04-08 | feat: Append GN3 computation completion marker to log file. | Alexander_Kabui | |
| 2025-04-08 | fix: Pylint fix for unused variable. | Alexander_Kabui | |
| 2025-04-08 | refactor: Check for geno_tranposed and founder_geno_transposed. | Alexander_Kabui | |
| 2025-04-07 | Remove debug logging: current_app.logger requires app context. | Frederick Muriuki Muriithi | |
| 2025-04-07 | Log out debug messages separate from active statements. | Frederick Muriuki Muriithi | |
| 2025-04-07 | Split the command if its a single, non-json-parseable string. | Frederick Muriuki Muriithi | |
| 2025-03-27 | refactor: Temporary disable checking sex covariates in rqtl2. | Alexander_Kabui | |
| 2025-03-27 | feat: Check for founder and covar file in rqtl2 metadata. | Alexander_Kabui | |
| 2025-03-21 | Use HTTPS for LLM endpoint. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-03-18 | Order species by species id. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-03-07 | Merge pull request #218 from genenetwork/chores/refactor-qtl2-script | Alexander Kabui | |
| refactor rqtl2 script. | |||
| 2025-03-07 | Demo CI in gn nairobi meet. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-03-07 | refactor function to process scan1 results. | Alexander_Kabui | |
| 2025-03-07 | refactor: Construct map object from cross with columns (Marker, chr,cM, Mb). | Alexander_Kabui | |
| 2025-03-07 | fix: Minor rqtl2 fixes. | Alexander_Kabui | |
| 2025-03-07 | refactor rqtl2 script. | Alexander_Kabui | |
| 2025-03-07 | Convert wikiId and versionId to ints. | Munyoki Kilyungi | |
| This fixes failing tests. * gn3/db/rdf/wiki.py (__sanitize_result): Convert versionId and wiki Id to ints. (get_wiki_entries_by_symbol): Get string representation of VersionId and the wikiId instead of the the URI. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-03-07 | Revert "fix: Replace file path fetching code in rqtl2.py with ↵ | Munyoki Kilyungi | |
| current_app.root_path" This reverts commit e7baf1a4cf05a4e7794a6531c92d367fcd8f1651. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-03-04 | Revert "test: Add unit tests for fibonacci function in rqtl2 module" | Munyoki Kilyungi | |
| This reverts commit 9bad745abd94fd0eeb0b0dc6aba0d6a74db33f81. | |||
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
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