Age | Commit message (Collapse) | Author |
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* gn3/db/__init__.py (fetchone): Make "WHERE" an Optional arg.
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We use prepared statements, so no need to have this.
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* gn3/db/__init__.py (diff_from_dict): We only use the keys of the dict!
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* gn3/db/phenotypes.py (fetchone): New function.
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Maps a string to it's dataclass.
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* gn3/db/phenotypes.py (update_phenotype): Delete it.
(update): New, more general function.
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See: https://www.py4u.net/discuss/188952
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* gn3/db/phenotypes.py (Phenotype): New dataclass.
(update_phenotype): New function.
[phenotype_column_mapping]: New variable.
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generate_rqtl_cmd and also made code check if output file already exists (so caching works)
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Fixed issue where covariates with numerical names were being ignored
Fixed issue where the hash filename wasn't being used for the permutation output
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