| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2025-02-06 | Add test assertions for writing data to csv. | Alexander_Kabui | |
| 2025-02-06 | refactor: Add file_path to output only if it is created. | Alexander_Kabui | |
| 2025-02-06 | refactor: Check if data before attempting write operation. | Alexander_Kabui | |
| 2025-02-06 | feat: Add unittests for rqtl2 computations. | Alexander_Kabui | |
| 2025-02-06 | refactor: return code for Calledprocesserror response. | Alexander_Kabui | |
| 2025-02-06 | refactor: Refactor compute endpoint for rqtl2. | Alexander_Kabui | |
| 2025-02-06 | feat: Add module docstring for rqtl2 computations. | Alexander_Kabui | |
| 2025-02-06 | refactor: remove unused imports. | Alexander_Kabui | |
| 2025-02-06 | feat: Add function to write input data to a json file. | Alexander_Kabui | |
| 2025-02-06 | feat: Add function to prepare files and workspace directory for computation. | Alexander_Kabui | |
| 2025-02-06 | feat: Add utility function to create a file if it does not exist. | Alexander_Kabui | |
| 2025-02-06 | feat: Add function to compose an rqtl2 run command. | Alexander_Kabui | |
| 2025-02-06 | feat: Add function to validate list of keys in object. | Alexander_Kabui | |
| 2025-02-06 | feat: Add function to generate rqtl2 data files. | Alexander_Kabui | |
| 2025-02-06 | feat: Add method to write list of data to csv file. | Alexander_Kabui | |
| 2025-02-06 | feat: Add computational module for rqtl2. | Alexander_Kabui | |
| 2025-01-28 | Pass in virtuoso ttl directory as a CLI option | Frederick Muriuki Muriithi | |
| Pass in the directory as a command-line option to add flexibility to the deployment. Prior to this commit, the script made the assumption that the TTL directory would show up on the path "/var/lib/data", which is not always the case. | |||
| 2025-01-27 | Revert "Set guix channel to b0b988c41c9e0e591274495a1b2d6f27fcdae15a." | Munyoki Kilyungi | |
| This reverts commit 23faa193d7b52fb0abf6f00dc405e7f10ba86b20. | |||
| 2025-01-27 | Type ignore gn_libs imports. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-01-27 | Ignore missing mypy library stubs for mypy. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-01-27 | Ignore pylint error for un-used import. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-01-27 | Delete unused imports. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-01-27 | Delete un-used database_connection test. | Munyoki Kilyungi | |
| * tests/unit/test_db_utils.py (test_database_connection): Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-01-27 | Set guix channel to b0b988c41c9e0e591274495a1b2d6f27fcdae15a. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-01-26 | Skip test that checks working of MySQLdb rather than GN3. | Frederick Muriuki Muriithi | |
| 2025-01-26 | Use gn-libs' `database_connection` function. | Frederick Muriuki Muriithi | |
| 2025-01-21 | Enable new inserts of new wiki entries. | Munyoki Kilyungi | |
| * gn3/api/metadata_api/wiki.py: Import Optional (edit_wiki): Add "/edit" route. Add new comment id. * gn3/db/wiki.py (get_next_comment_id): New function for fetching the getting the next comment_id. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-01-13 | mypy fixes. | Alexander_Kabui | |
| 2025-01-13 | refactor: Returns markers and pseudomarkers as names in pairscan results. | Alexander_Kabui | |
| 2025-01-11 | Merge pull request #206 from genenetwork/enhancements/streaming-modularization | Alexander Kabui | |
| Enhancements/streaming modularization | |||
| 2025-01-09 | Typo fixes. | Alexander_Kabui | |
| 2025-01-09 | Minor typo fix. | Alexander_Kabui | |
| 2025-01-09 | Minor fix. | Alexander_Kabui | |
| 2025-01-09 | refactor: raise and Handle error a app level. | Alexander_Kabui | |
| 2025-01-09 | feat: Add a decorator function to enable streaming functinality. | Alexander_Kabui | |
| 2025-01-09 | fix: pylint fix. | Alexander_Kabui | |
| 2025-01-09 | refactor: remove obsolete streaming endpoint. | Alexander_Kabui | |
| 2025-01-09 | refactor: enhance docstring for streaming endpoint. | Alexander_Kabui | |
| 2025-01-09 | feat: Add and register streaming blueprint. | Alexander_Kabui | |
| 2025-01-09 | feat: Add streaming main endpoint. | Alexander_Kabui | |
| 2025-01-09 | feat: Init add module for streaming api endpoins. | Alexander_Kabui | |
| 2025-01-09 | refactor: import streaming functionality from module. | Alexander_Kabui | |
| 2025-01-09 | feat: Add function to run an external process and capture result in a file. | Alexander_Kabui | |
| 2025-01-09 | feat: Init add streaming module for genenetwork3. | Alexander_Kabui | |
| 2025-01-08 | refactor: Modify error message for run_process function. | Alexander_Kabui | |
| 2025-01-08 | refactor: Return results as dict with correct metadata for subprocess. | Alexander_Kabui | |
| 2025-01-08 | refactor: Pass arg commands to subprocess as a list. | Alexander_Kabui | |
| * Use with open context for subprocess. * Correctly handle subprocess error. | |||
| 2025-01-07 | feat: Revert commit 688d6a4. | Alexander_Kabui | |
| 2025-01-07 | feat: remove shell True to for debug. | Alexander_Kabui | |
| 2025-01-06 | feat: Add print statements for start and end of qtl script run. | Alexander_Kabui | |
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
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