index
:
genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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Author
2024-03-12
Commit migration script for CaseAttribute* tables
Frederick Muriuki Muriithi
2024-03-04
Check for exception args and provide traceback.
Frederick Muriuki Muriithi
2024-03-04
Handle generic exceptions gracefully.
Frederick Muriuki Muriithi
2024-02-25
Disable too-many-arguments for "run_reaper".
Munyoki Kilyungi
2024-02-25
Fix line-too-long error.
Munyoki Kilyungi
2024-02-25
Correctly handle URLError.
Munyoki Kilyungi
2024-02-25
Construct genofile_path using pathlib module.
Munyoki Kilyungi
2024-02-19
Pass qtlreaper command path as argument to run_reaper
zsloan
2024-02-15
Use correct names for dataset entries in json result.
Munyoki Kilyungi
2024-02-14
Delete type hints from handle_sparql_errors.
Munyoki Kilyungi
2024-02-14
Delete trailing space.
Munyoki Kilyungi
2024-02-14
Remove try ... except clauses around RDF endpoints.
Munyoki Kilyungi
2024-02-14
Minor pep-8 fixes.
Munyoki Kilyungi
2024-02-14
Handle sparql errors at the app level.
Munyoki Kilyungi
2024-02-14
raise error for fahamu api 0 task_id
Alexander_Kabui
2024-02-14
Stem the dataset's id before constructing the path.
Munyoki Kilyungi
2024-02-13
Use correct path for dataset metadata files.
Munyoki Kilyungi
2024-02-13
Fetch extra metadata from text-files when fetching datasets.
Munyoki Kilyungi
2024-02-13
Update "dataset/<name>" API endpoint to fetch metadata from files.
Munyoki Kilyungi
2024-02-13
Retrieve metadata from text files given a path.
Munyoki Kilyungi
2024-02-12
pep8 formatting
Alexander_Kabui
2024-01-30
Add the traceback to the exceptions for display.
Frederick Muriuki Muriithi
2024-01-26
centralize common errors
Alexander_Kabui
2024-01-26
Feature/gn llm caching (#148)
Alexander Kabui
2024-01-17
fix error message for empty responses
Alexander_Kabui
2024-01-17
Adjust retry parameters and response handling in custom_request
Alexander_Kabui
2024-01-17
Increase timeout to 30s to fix 'Read timed out issue
Alexander_Kabui
2024-01-17
Enhance error response message in API endpoint
Alexander_Kabui
2024-01-17
max no of retries for user to fahamu api
Alexander_Kabui
2024-01-17
fix pylint errors
Alexander_Kabui
2024-01-17
temp fix:disable pylint check
Alexander_Kabui
2024-01-17
Refactor llms.process: Rename getGNQA to get_gnqa
Alexander_Kabui
2024-01-17
Feature/gn llm refactoring (#147)
Alexander Kabui
2024-01-16
add api endpoint for rating reference documents (#146)
Alexander Kabui
2024-01-10
Add extra pylint rule to except files that are too long.
Munyoki Kilyungi
2024-01-10
Optionally fetch dataset metadata if provided during genotype fetch.
Munyoki Kilyungi
2024-01-10
Switch to gnt:belongsToSpecies in genotype queries.
Munyoki Kilyungi
2024-01-10
Remove hard-coded dataset name.
Munyoki Kilyungi
2024-01-08
merge for latest commits
Alexander_Kabui
2024-01-08
fix query formatting and increase no retries
Alexander_Kabui
2024-01-08
Optionally fetch dataset metadata if provided during probeset fetch.
Munyoki Kilyungi
2024-01-08
add json file for all references
Alexander_Kabui
2024-01-08
Update retry parameters for custom requests to Fahamu AI endpoint.
Munyoki Kilyungi
2024-01-08
disable process wait
Alexander_Kabui
2024-01-06
Remove extra gene metadata from query as it's un-necessary.
Munyoki Kilyungi
2024-01-06
Add extra keys to the Probeset's json-ld context.
Munyoki Kilyungi
2024-01-06
Refactor gene symbol handling and add references to probeset.
Munyoki Kilyungi
2024-01-06
Use gnt:geneSymbol property to fetch genes in Probeset RDF query.
Munyoki Kilyungi
2024-01-05
http request header fixes
Alexander_Kabui
2024-01-05
max delay time
Alexander_Kabui
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