genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2024-03-15	add error handling for invalid tokens	Alexander_Kabui
2024-03-15	Remove ALL html templates from GeneNetwork3	Frederick Muriuki Muriithi
2024-03-13	Add documentation on what the script is for and does.	Frederick Muriuki Muriithi
2024-03-13	Remove debug prints in the script	Frederick Muriuki Muriithi
2024-03-12	Commit migration script for CaseAttribute* tables	Frederick Muriuki Muriithi
2024-03-04	Check for exception args and provide traceback.	Frederick Muriuki Muriithi
2024-03-04	Handle generic exceptions gracefully.	Frederick Muriuki Muriithi
2024-02-25	Disable too-many-arguments for "run_reaper".	Munyoki Kilyungi
2024-02-25	Fix line-too-long error.	Munyoki Kilyungi
2024-02-25	Correctly handle URLError.	Munyoki Kilyungi
2024-02-25	Construct genofile_path using pathlib module.	Munyoki Kilyungi
2024-02-19	Pass qtlreaper command path as argument to run_reaper	zsloan
2024-02-15	Use correct names for dataset entries in json result.	Munyoki Kilyungi
2024-02-14	Delete type hints from handle_sparql_errors.	Munyoki Kilyungi
2024-02-14	Delete trailing space.	Munyoki Kilyungi
2024-02-14	Remove try ... except clauses around RDF endpoints.	Munyoki Kilyungi
2024-02-14	Minor pep-8 fixes.	Munyoki Kilyungi
2024-02-14	Handle sparql errors at the app level.	Munyoki Kilyungi
2024-02-14	raise error for fahamu api 0 task_id	Alexander_Kabui
2024-02-14	Stem the dataset's id before constructing the path.	Munyoki Kilyungi
2024-02-13	Use correct path for dataset metadata files.	Munyoki Kilyungi
2024-02-13	Fetch extra metadata from text-files when fetching datasets.	Munyoki Kilyungi
2024-02-13	Update "dataset/<name>" API endpoint to fetch metadata from files.	Munyoki Kilyungi
2024-02-13	Retrieve metadata from text files given a path.	Munyoki Kilyungi
2024-02-12	pep8 formatting	Alexander_Kabui
2024-01-30	Add the traceback to the exceptions for display.	Frederick Muriuki Muriithi
2024-01-26	centralize common errors	Alexander_Kabui
2024-01-26	Feature/gn llm caching (#148)	Alexander Kabui
2024-01-17	fix error message for empty responses	Alexander_Kabui
2024-01-17	Adjust retry parameters and response handling in custom_request	Alexander_Kabui
2024-01-17	Increase timeout to 30s to fix 'Read timed out issue	Alexander_Kabui
2024-01-17	Enhance error response message in API endpoint	Alexander_Kabui
2024-01-17	max no of retries for user to fahamu api	Alexander_Kabui
2024-01-17	fix pylint errors	Alexander_Kabui
2024-01-17	temp fix:disable pylint check	Alexander_Kabui
2024-01-17	Refactor llms.process: Rename getGNQA to get_gnqa	Alexander_Kabui
2024-01-17	Feature/gn llm refactoring (#147)	Alexander Kabui
2024-01-16	add api endpoint for rating reference documents (#146)	Alexander Kabui
2024-01-10	Add extra pylint rule to except files that are too long.	Munyoki Kilyungi
2024-01-10	Optionally fetch dataset metadata if provided during genotype fetch.	Munyoki Kilyungi
2024-01-10	Switch to gnt:belongsToSpecies in genotype queries.	Munyoki Kilyungi
2024-01-10	Remove hard-coded dataset name.	Munyoki Kilyungi
2024-01-08	merge for latest commits	Alexander_Kabui
2024-01-08	fix query formatting and increase no retries	Alexander_Kabui
2024-01-08	Optionally fetch dataset metadata if provided during probeset fetch.	Munyoki Kilyungi
2024-01-08	add json file for all references	Alexander_Kabui
2024-01-08	Update retry parameters for custom requests to Fahamu AI endpoint.	Munyoki Kilyungi
2024-01-08	disable process wait	Alexander_Kabui
2024-01-06	Remove extra gene metadata from query as it's un-necessary.	Munyoki Kilyungi
2024-01-06	Add extra keys to the Probeset's json-ld context.	Munyoki Kilyungi