diff options
Diffstat (limited to 'tests/unit/db')
| -rw-r--r-- | tests/unit/db/test_sample_data.py | 21 |
1 files changed, 8 insertions, 13 deletions
diff --git a/tests/unit/db/test_sample_data.py b/tests/unit/db/test_sample_data.py index 4c64da4..6d3610e 100644 --- a/tests/unit/db/test_sample_data.py +++ b/tests/unit/db/test_sample_data.py @@ -23,15 +23,14 @@ def test_insert_sample_data(mocker): 0, ) mocker.patch( - "gn3.db.sample_data.get_sample_data_ids", + "gn3.db.sample_data.get_pheno_sample_data_ids", return_value=(strain_id, data_id, inbredset_id), ) insert_sample_data( conn=mock_conn, - trait_name=35, data="BXD1,18,3,0,Red,M", csv_header="Strain Name,Value,SE,Count,Color,Sex (13)", - phenotype_id=10007, + trait_info={'trait_name': 35, 'phenotype_id': 10007} ) calls = [ mocker.call( @@ -90,15 +89,14 @@ def test_delete_sample_data(mocker): strain_id, data_id, inbredset_id = 1, 17373, 20 with mock_conn.cursor() as cursor: mocker.patch( - "gn3.db.sample_data.get_sample_data_ids", + "gn3.db.sample_data.get_pheno_sample_data_ids", return_value=(strain_id, data_id, inbredset_id), ) delete_sample_data( conn=mock_conn, - trait_name=35, data="BXD1,18,3,0,Red,M", csv_header="Strain Name,Value,SE,Count,Color,Sex (17)", - phenotype_id=10007, + trait_info={'trait_name': 35, 'phenotype_id': 10007} ) calls = [ mocker.call( @@ -164,35 +162,32 @@ def test_update_sample_data(mocker): strain_id, data_id, inbredset_id = 1, 17373, 20 with mock_conn.cursor() as cursor: mocker.patch( - "gn3.db.sample_data.get_sample_data_ids", + "gn3.db.sample_data.get_pheno_sample_data_ids", return_value=(strain_id, data_id, inbredset_id), ) mocker.patch("gn3.db.sample_data.insert_sample_data", return_value=1) mocker.patch("gn3.db.sample_data.delete_sample_data", return_value=1) update_sample_data( conn=mock_conn, - trait_name=35, original_data="BXD1,18,x,0,x,M,x,Red", updated_data="BXD1,x,2,1,2,F,2,Green", csv_header="Strain Name,Value,SE,Count,pH,Sex (13),Age,Color", - phenotype_id=10007, + trait_info={'trait_name': 35, 'phenotype_id': 10007} ) # pylint: disable=[E1101] gn3.db.sample_data.insert_sample_data.assert_called_once_with( conn=mock_conn, - trait_name=35, data="BXD1,2,2,2", csv_header="Strain Name,SE,pH,Age", - phenotype_id=10007, + trait_info={'trait_name': 35, 'phenotype_id': 10007} ) # pylint: disable=[E1101] gn3.db.sample_data.delete_sample_data.assert_called_once_with( conn=mock_conn, - trait_name=35, data="BXD1,18", csv_header="Strain Name,Value", - phenotype_id=10007, + trait_info={'trait_name': 35, 'phenotype_id': 10007} ) cursor.execute.assert_has_calls( |