diff options
Diffstat (limited to 'tests/unit/computations/test_partial_correlations.py')
| -rw-r--r-- | tests/unit/computations/test_partial_correlations.py | 9 |
1 files changed, 9 insertions, 0 deletions
diff --git a/tests/unit/computations/test_partial_correlations.py b/tests/unit/computations/test_partial_correlations.py index 3690ca4..ee17659 100644 --- a/tests/unit/computations/test_partial_correlations.py +++ b/tests/unit/computations/test_partial_correlations.py @@ -3,6 +3,7 @@ from unittest import TestCase import pandas +import pytest from numpy.testing import assert_allclose from gn3.computations.partial_correlations import ( @@ -98,6 +99,7 @@ dictified_control_samples = ( class TestPartialCorrelations(TestCase): """Class for testing partial correlations computation functions""" + @pytest.mark.unit_test def test_control_samples(self): """Test that the control_samples works as expected.""" self.assertEqual( @@ -112,6 +114,7 @@ class TestPartialCorrelations(TestCase): (None, None, None)), (6, 4, 3))) + @pytest.mark.unit_test def test_dictify_by_samples(self): """ Test that `dictify_by_samples` generates the appropriate dict @@ -142,6 +145,7 @@ class TestPartialCorrelations(TestCase): (6, 4, 3))), dictified_control_samples) + @pytest.mark.unit_test def test_fix_samples(self): """ Test that `fix_samples` returns only the common samples @@ -187,6 +191,7 @@ class TestPartialCorrelations(TestCase): (None, None, None, None, None, None, None, None, None, None, None, None, None))) + @pytest.mark.unit_test def test_find_identical_traits(self): """ Test `gn3.partial_correlations.find_identical_traits`. @@ -219,6 +224,7 @@ class TestPartialCorrelations(TestCase): self.assertEqual( find_identical_traits(primn, primv, contn, contv), expected) + @pytest.mark.unit_test def test_tissue_correlation_error(self): """ Test that `tissue_correlation` raises specific exceptions for particular @@ -253,6 +259,7 @@ class TestPartialCorrelations(TestCase): with self.assertRaises(error, msg=error_msg): tissue_correlation(primary, target, method) + @pytest.mark.unit_test def test_tissue_correlation(self): # pylint: disable=R0201 """ Test that the correct correlation values are computed for the given: @@ -269,6 +276,7 @@ class TestPartialCorrelations(TestCase): assert_allclose( tissue_correlation(primary, target, method), expected) + @pytest.mark.unit_test def test_good_dataset_samples_indexes(self): """ Test that `good_dataset_samples_indexes` returns correct indices. @@ -279,6 +287,7 @@ class TestPartialCorrelations(TestCase): ("a", "b", "c", "d", "e", "f", "g", "h", "i", "j", "k", "l")), (0, 4, 8, 10)) + @pytest.mark.unit_test def test_build_data_frame(self): """ Check that the function builds the correct data frame. |