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-rw-r--r--scripts/rqtl2_wrapper.R2
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/rqtl2_wrapper.R b/scripts/rqtl2_wrapper.R
index accf3fa..69606b2 100644
--- a/scripts/rqtl2_wrapper.R
+++ b/scripts/rqtl2_wrapper.R
@@ -100,7 +100,7 @@ generate_cross_object <- function(control_file_path, json_data) {
geno_file = json_data$geno_file,
pheno_file = json_data$pheno_file,
gmap_file = json_data$geno_map_file,
- pmap_file = json_data$pheno_map_file,
+ pmap_file = json_data$physical_map_file,
phenocovar_file = json_data$phenocovar_file,
geno_codes = json_data$geno_codes,
alleles = json_data$alleles,