diff options
Diffstat (limited to 'scripts/index-genenetwork')
| -rwxr-xr-x | scripts/index-genenetwork | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/scripts/index-genenetwork b/scripts/index-genenetwork index 8efe955..5c22b3b 100755 --- a/scripts/index-genenetwork +++ b/scripts/index-genenetwork @@ -147,14 +147,14 @@ PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX gnt: <http://genenetwork.org/term/> PREFIX gnc: <http://genenetwork.org/category/> -SELECT * WHERE { +SELECT ?symbolName ?speciesName GROUP_CONCAT(DISTINCT ?comment ; separator=\"\\n\") AS ?comment WHERE { ?symbol rdfs:comment _:node ; rdfs:label ?symbolName . _:node rdf:type gnc:NCBIWikiEntry ; gnt:belongsToSpecies ?species ; rdfs:comment ?comment . ?species gnt:shortName ?speciesName . -} +} GROUP BY ?speciesName ?symbolName """ @@ -346,7 +346,7 @@ def index_genes(xapian_build_directory: pathlib.Path, chunk_index: int, namespac Maybe.apply(index_from_dictionary).to_arguments( Just((trait["species"].value, trait["symbol"].value)), - Just("XRWD"), + Just("XWK"), Just(share.wiki_cache) ) @@ -488,7 +488,7 @@ def is_data_modified(xapian_directory: str, sparql_uri: str) -> None: dir_ = pathlib.Path(xapian_directory) with locked_xapian_writable_database(dir_) as db, database_connection(sql_uri) as conn: - checksums = "" + checksums = "-1" if db.get_metadata('tables'): checksums = " ".join([ str(result["Checksum"].value) |