diff options
Diffstat (limited to 'gn3')
| -rw-r--r-- | gn3/db/rdf.py | 18 |
1 files changed, 0 insertions, 18 deletions
diff --git a/gn3/db/rdf.py b/gn3/db/rdf.py index c559774..e92ccdb 100644 --- a/gn3/db/rdf.py +++ b/gn3/db/rdf.py @@ -184,7 +184,6 @@ CONSTRUCT { } """ response: MonadicDict = MonadicDict() - for key, value in sparql_query( sparql_conn, Template(__metadata_query) @@ -199,29 +198,12 @@ CONSTRUCT { return response -def get_trait_metadata( - sparql_conn: SPARQLWrapper, - trait_name: str, - dataset_name: str ): - """Return metadata about a given trait""" __metadata_query = """ -PREFIX gn: <http://genenetwork.org/> -SELECT strafter((str(?key)), "http://genenetwork.org/sampledata:") as ?key - ?value WHERE { - gn:sampledata_$trait_name gn:sampledata:dataset "$dataset_name" . - gn:sampledata_$trait_name ?key ?value . } """ result: MonadicDict = MonadicDict() - for _r in sparql_query( sparql_conn, Template(__metadata_query) - .substitute(trait_name=trait_name, - dataset_name=dataset_name) - ): - _key = _r["key"].bind(lambda x: x["value"]) # type:ignore - if _key: - result[_key] = _r["value"].bind(lambda x: Just(x["value"])) # type:ignore return result |