diff options
Diffstat (limited to 'gn3')
| -rw-r--r-- | gn3/db/sample_data.py | 12 |
1 files changed, 6 insertions, 6 deletions
diff --git a/gn3/db/sample_data.py b/gn3/db/sample_data.py index 1f9d519..38fa3d9 100644 --- a/gn3/db/sample_data.py +++ b/gn3/db/sample_data.py @@ -143,7 +143,7 @@ ORDER BY st.Name""", (trait_name, phenotype_id)) return sample_data def get_pheno_csv_sample_data( - conn: Any, trait_name: int, phenotype_id: int, sample_list: list + conn: Any, trait_name: int, group_id: int, sample_list: list ) -> str: """Fetch a phenotype (Publish in DB) trait and return it as a csv string""" with conn.cursor() as cursor: @@ -151,11 +151,11 @@ def get_pheno_csv_sample_data( SELECT DISTINCT st.Name, concat(st.Name, ',', ifnull(pd.value, 'x'), ',', ifnull(ps.error, 'x'), ',', ifnull(ns.count, 'x')) AS 'Data' FROM PublishFreeze pf JOIN PublishXRef px ON px.InbredSetId = pf.InbredSetId -JOIN PublishData pd ON pd.Id = px.DataId JOIN Strain st ON pd.StrainId = st.Id -LEFT JOIN PublishSE ps ON ps.DataId = pd.Id AND ps.StrainId = pd.StrainId -LEFT JOIN NStrain ns ON ns.DataId = pd.Id AND ns.StrainId = pd.StrainId -WHERE px.Id = %s AND px.PhenotypeId = %s ORDER BY st.Name""", - (trait_name, phenotype_id)) + JOIN PublishData pd ON pd.Id = px.DataId JOIN Strain st ON pd.StrainId = st.Id + LEFT JOIN PublishSE ps ON ps.DataId = pd.Id AND ps.StrainId = pd.StrainId + LEFT JOIN NStrain ns ON ns.DataId = pd.Id AND ns.StrainId = pd.StrainId +WHERE px.Id = %s AND px.InbredSetId = %s ORDER BY st.Name""", + (trait_name, group_id)) if not (data := cursor.fetchall()): return "No Sample Data Found" |