diff options
Diffstat (limited to 'gn3')
| -rw-r--r-- | gn3/heatmaps.py | 12 |
1 files changed, 12 insertions, 0 deletions
diff --git a/gn3/heatmaps.py b/gn3/heatmaps.py index 991ddec..0c00d6c 100644 --- a/gn3/heatmaps.py +++ b/gn3/heatmaps.py @@ -277,6 +277,9 @@ def get_nearest_marker(traits_list, genotype): return [marker_finder(trait) for trait in traits_list] def get_lrs_from_chr(trait, chr_name): + """ + Retrieve the LRS values for a specific chromosome in the given trait. + """ chromosome = trait["chromosomes"].get(chr_name) if chromosome: return [ @@ -284,6 +287,15 @@ def get_lrs_from_chr(trait, chr_name): sorted(chromosome["loci"], key=lambda loc: loc["Locus"])] return [None] +def process_traits_data_for_heatmap(data, trait_names, chromosome_names): + """ + Process the traits data in a format useful for generating heatmap diagrams. + """ + hdata = [ + [get_lrs_from_chr(data[trait], chr_name) for trait in trait_names] + for chr_name in chromosome_names] + return hdata + # # Grey + Blue + Red # def generate_heatmap(): # cols = 20 |