1 files changed, 0 insertions, 47 deletions
diff --git a/gn3/utility/get_group_samplelists.py b/gn3/utility/get_group_samplelists.py
deleted file mode 100644
index 8fb322a..0000000
--- a/gn3/utility/get_group_samplelists.py
+++ /dev/null
@@ -1,47 +0,0 @@
-
-"""module for group samplelist"""
-import os
-
-#todo close the files after opening
-def get_samplelist(file_type, geno_file):
-    """get samplelist function"""
-    if file_type == "geno":
-        return get_samplelist_from_geno(geno_file)
-    elif file_type == "plink":
-        return get_samplelist_from_plink(geno_file)
-
-def get_samplelist_from_geno(genofilename):
-    if os.path.isfile(genofilename + '.gz'):
-        genofilename += '.gz'
-        genofile = gzip.open(genofilename)
-    else:
-        genofile = open(genofilename)
-
-    for line in genofile:
-        line = line.strip()
-        if not line:
-            continue
-        if line.startswith(("#", "@")):
-            continue
-        break
-
-    headers = line.split("\t")
-
-    if headers[3] == "Mb":
-        samplelist = headers[4:]
-    else:
-        samplelist = headers[3:]
-    return samplelist
-
-
-
-def get_samplelist_from_plink(genofilename):
-    """get samplelist from plink"""
-    genofile = open(genofilename)
-
-    samplelist = []
-    for line in genofile:
-        line = line.split(" ")
-        samplelist.append(line[1])
-
-    return samplelist