aboutsummaryrefslogtreecommitdiff
path: root/gn3/utility/corr_result_helpers.py
diff options
context:
space:
mode:
Diffstat (limited to 'gn3/utility/corr_result_helpers.py')
-rw-r--r--gn3/utility/corr_result_helpers.py45
1 files changed, 0 insertions, 45 deletions
diff --git a/gn3/utility/corr_result_helpers.py b/gn3/utility/corr_result_helpers.py
deleted file mode 100644
index a68308e..0000000
--- a/gn3/utility/corr_result_helpers.py
+++ /dev/null
@@ -1,45 +0,0 @@
-"""module contains helper function for corr results"""
-
-#pylint:disable=C0103
-#above disable snake_case for variable tod refactor
-def normalize_values(a_values, b_values):
- """
- Trim two lists of values to contain only the values they both share
-
- Given two lists of sample values, trim each list so that it contains
- only the samples that contain a value in both lists. Also returns
- the number of such samples.
-
- >>> normalize_values([2.3, None, None, 3.2, 4.1, 5], [3.4, 7.2, 1.3, None, 6.2, 4.1])
- ([2.3, 4.1, 5], [3.4, 6.2, 4.1], 3)
-
- """
- a_new = []
- b_new = []
- for a, b in zip(a_values, b_values):
- if (a and b is not None):
- a_new.append(a)
- b_new.append(b)
- return a_new, b_new, len(a_new)
-
-
-def common_keys(a_samples, b_samples):
- """
- >>> a = dict(BXD1 = 9.113, BXD2 = 9.825, BXD14 = 8.985, BXD15 = 9.300)
- >>> b = dict(BXD1 = 9.723, BXD3 = 9.825, BXD14 = 9.124, BXD16 = 9.300)
- >>> sorted(common_keys(a, b))
- ['BXD1', 'BXD14']
- """
- return set(a_samples.keys()).intersection(set(b_samples.keys()))
-
-
-def normalize_values_with_samples(a_samples, b_samples):
- """function to normalize values with samples"""
- common_samples = common_keys(a_samples, b_samples)
- a_new = {}
- b_new = {}
- for sample in common_samples:
- a_new[sample] = a_samples[sample]
- b_new[sample] = b_samples[sample]
-
- return a_new, b_new, len(a_new)