diff options
Diffstat (limited to 'gn3/llms/process.py')
| -rw-r--r-- | gn3/llms/process.py | 70 |
1 files changed, 35 insertions, 35 deletions
diff --git a/gn3/llms/process.py b/gn3/llms/process.py index b8e7ded..58d565a 100644 --- a/gn3/llms/process.py +++ b/gn3/llms/process.py @@ -11,17 +11,9 @@ from gn3.llms.client import GeneNetworkQAClient from gn3.llms.response import DocIDs -baseUrl = 'https://genenetwork.fahamuai.com/api/tasks' -answerUrl = baseUrl + '/answers' -basedir = os.path.abspath(os.path.dirname(__file__)) -apiClient = GeneNetworkQAClient(requests.Session(), api_key='') - - - - - - - +baseUrl = 'https://genenetwork.fahamuai.com/api/tasks' +answerUrl = baseUrl + '/answers' +basedir = os.path.abspath(os.path.dirname(__file__)) def formatBibliographyInfo(bibInfo): @@ -30,27 +22,29 @@ def formatBibliographyInfo(bibInfo): bibInfo = bibInfo.removesuffix('.txt') elif isinstance(bibInfo, dict): # format string bibliography information - bibInfo = "{0}.{1}.{2}.{3} ".format(bibInfo['author'], bibInfo['title'], bibInfo['year'], bibInfo['doi']) + bibInfo = "{0}.{1}.{2}.{3} ".format( + bibInfo['author'], bibInfo['title'], bibInfo['year'], bibInfo['doi']) return bibInfo -def askTheDocuments( extendUrl, my_auth ): +def askTheDocuments(extendUrl, my_auth): try: - res = requests.post(baseUrl+extendUrl, + res = requests.post(baseUrl+extendUrl, data={}, headers=my_auth) res.raise_for_status() except: - raise # what + raise # what if (res.status_code != 200): return negativeStatusMsg(res), 0 - task_id = getTaskIDFromResult(res) - res = getAnswerUsingTaskID(task_id, my_auth) + task_id = getTaskIDFromResult(res) + res = getAnswerUsingTaskID(task_id, my_auth) if (res.status_code != 200): return negativeStatusMsg(res), 0 return res, 1 -def getAnswerUsingTaskID( extendUrl, my_auth ): + +def getAnswerUsingTaskID(extendUrl, my_auth): try: res = requests.get(answerUrl+extendUrl, data={}, headers=my_auth) res.raise_for_status() @@ -58,8 +52,9 @@ def getAnswerUsingTaskID( extendUrl, my_auth ): raise return res + def openAPIConfig(): - f = open(os.path.join(basedir, "api.config.json") , "rb" ) + f = open(os.path.join(basedir, "api.config.json"), "rb") result = json.load(f) f.close() return result @@ -67,45 +62,50 @@ def openAPIConfig(): def getTaskIDFromResult(res): task_id = json.loads(res.text) - result = '?task_id=' + str(task_id['task_id']) + result = '?task_id=' + str(task_id['task_id']) return result + def negativeStatusMsg(res): - return 'Problems\n\tStatus code => {0}\n\tReason=> {1}'.format(res.status_code, res.reason) # mypy: ignore + # mypy: ignore + return 'Problems\n\tStatus code => {0}\n\tReason=> {1}'.format(res.status_code, res.reason) + def filterResponseText(val): return json.loads(''.join([str(char) for char in val if char in string.printable])) -def getGNQA(query): - res, task_id = apiClient.ask('?ask=' + query) + +def getGNQA(query, auth_token): + apiClient = GeneNetworkQAClient(requests.Session(), api_key=auth_token) + res, task_id = apiClient.ask('?ask=' + query, auth_token) res, success = apiClient.get_answer(task_id) - if ( success == 1 ): - respText = filterResponseText(res.text) + if (success == 1): + respText = filterResponseText(res.text) if respText.get("data") is None: - return "Unfortunately I have nothing on the query",[] - answer = respText['data']['answer'] - context = respText['data']['context'] + return "Unfortunately I have nothing on the query", [] + answer = respText['data']['answer'] + context = respText['data']['context'] references = parse_context(context) - return answer,references + return answer, references else: return res, "Unfortunately I have nothing." - def parse_context(context): """parse content map id to reference""" result = [] - for doc_ids,summary in context.items(): + for doc_ids, summary in context.items(): comboTxt = "" - for entry in summary: + for entry in summary: comboTxt += '\t' + entry['text'] docInfo = DocIDs().getInfo(doc_ids) - if doc_ids !=docInfo: + if doc_ids != docInfo: bibInfo = formatBibliographyInfo(docInfo) else: bibInfo = doc_ids - result.append({"doc_id":doc_ids,"bibInfo":bibInfo,"comboTxt":comboTxt}) - return result
\ No newline at end of file + result.append( + {"doc_id": doc_ids, "bibInfo": bibInfo, "comboTxt": comboTxt}) + return result |