diff options
Diffstat (limited to 'gn3/heatmaps.py')
| -rw-r--r-- | gn3/heatmaps.py | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/gn3/heatmaps.py b/gn3/heatmaps.py index 198fb45..991ddec 100644 --- a/gn3/heatmaps.py +++ b/gn3/heatmaps.py @@ -276,6 +276,14 @@ def get_nearest_marker(traits_list, genotype): marker_finder = nearest_marker_finder(genotype) return [marker_finder(trait) for trait in traits_list] +def get_lrs_from_chr(trait, chr_name): + chromosome = trait["chromosomes"].get(chr_name) + if chromosome: + return [ + locus["LRS"] for locus in + sorted(chromosome["loci"], key=lambda loc: loc["Locus"])] + return [None] + # # Grey + Blue + Red # def generate_heatmap(): # cols = 20 |