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-rw-r--r--gn3/db/rdf.py42
1 files changed, 0 insertions, 42 deletions
diff --git a/gn3/db/rdf.py b/gn3/db/rdf.py
index 472da64..c5a75f2 100644
--- a/gn3/db/rdf.py
+++ b/gn3/db/rdf.py
@@ -213,45 +213,3 @@ CONSTRUCT {
)[0].items():
result[key] = value
return result
-
-
-def get_genotype_metadata(
- sparql_conn: SPARQLWrapper, name: str
-):
- """Return info about a phenotype with a given NAME"""
- __metadata_query = """
-$prefix
-
-CONSTRUCT {
- ?genotype ?pPredicate ?pValue .
- ?genotype gn:speciesName ?speciesName .
- ?genotype gn:inbredSetName ?inbredSetBinomialName .
- ?genotype gn:datasetName ?datasetFullName .
-} WHERE {
- ?genotype ?pPredicate ?pValue .
- OPTIONAL {
- ?genotype gn:genotypeOfDataset ?dataset .
- ?dataset gn:fullName ?datasetFullName .
- }.
- OPTIONAL {
- ?genotype gn:genotypeOfDataset ?dataset .
- ?dataset gn:datasetOfInbredSet ?inbredSet .
- ?inbredSet gn:binomialName ?inbredSetBinomialName .
- ?inbredSet gn:inbredSetOfSpecies ?species .
- ?species gn:displayName ?speciesName .
- } .
- FILTER( ?genotype = genotype:$name ) .
- MINUS {
- ?genotype rdf:type ?pValue .
- }
-}
-"""
- result: MonadicDict = MonadicDict()
- for key, value in sparql_query(
- sparql_conn,
- Template(__metadata_query)
- .substitute(name=name,
- prefix=RDF_PREFIXES)
- )[0].items():
- result[key] = value
- return result