diff options
Diffstat (limited to 'gn3/db/sample_data.py')
| -rw-r--r-- | gn3/db/sample_data.py | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/gn3/db/sample_data.py b/gn3/db/sample_data.py index 06b5767..a410978 100644 --- a/gn3/db/sample_data.py +++ b/gn3/db/sample_data.py @@ -1,3 +1,4 @@ +from gn3.csvcmp import extract_strain_name from typing import Any, Tuple, Union import MySQLdb @@ -200,7 +201,7 @@ def delete_sample_data(conn: Any, strain_id, data_id, inbredset_id = get_sample_data_ids( conn=conn, publishxref_id=trait_name, phenotype_id=phenotype_id, - strain_name=strain_name) + strain_name=extract_strain_name(csv_header, data)) none_case_attrs = { "Strain Name": lambda: 0, @@ -273,7 +274,7 @@ def insert_sample_data(conn: Any, # pylint: disable=[R0913] strain_id, data_id, inbredset_id = get_sample_data_ids( conn=conn, publishxref_id=trait_name, phenotype_id=phenotype_id, - strain_name=strain_name) + strain_name=extract_strain_name(csv_header, data)) none_case_attrs = { "Strain Name": lambda _: 0, |