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-rw-r--r--gn3/db/phenotypes.py59
1 files changed, 0 insertions, 59 deletions
diff --git a/gn3/db/phenotypes.py b/gn3/db/phenotypes.py
index 605ca73..e8b0b0b 100644
--- a/gn3/db/phenotypes.py
+++ b/gn3/db/phenotypes.py
@@ -105,65 +105,6 @@ publication_mapping = {
     "year": "Year",
 }
 
-
-@dataclass(frozen=True)
-class Probeset:
-    """Data Type that represents a Probeset"""
-    id_: Optional[int] = None
-    name: Optional[str] = None
-    symbol: Optional[str] = None
-    description: Optional[str] = None
-    probe_target_description: Optional[str] = None
-    chr_: Optional[str] = None
-    mb: Optional[float] = None  # pylint: disable=C0103
-    alias: Optional[str] = None
-    geneid: Optional[str] = None
-    homologeneid: Optional[str] = None
-    unigeneid: Optional[str] = None
-    omim: Optional[str] = None
-    refseq_transcriptid: Optional[str] = None
-    blatseq: Optional[str] = None
-    targetseq: Optional[str] = None
-    strand_probe: Optional[str] = None
-    probe_set_target_region: Optional[str] = None
-    probe_set_specificity: Optional[float] = None
-    probe_set_blat_score: Optional[float] = None
-    probe_set_blat_mb_start: Optional[float] = None
-    probe_set_blat_mb_end: Optional[float] = None
-    probe_set_strand: Optional[str] = None
-    probe_set_note_by_rw: Optional[str] = None
-    flag: Optional[str] = None
-
-
-# Mapping from the Phenotype dataclass to the actual column names in the
-# database
-probeset_mapping = {
-    "id_": "Id",
-    "name": "Name",
-    "symbol": "symbol",
-    "description": "description",
-    "probe_target_description": "Probe_Target_Description",
-    "chr_": "Chr",
-    "mb": "Mb",
-    "alias": "alias",
-    "geneid": "GeneId",
-    "homologeneid": "HomoloGeneID",
-    "unigeneid": "UniGeneId",
-    "omim": "OMIM",
-    "refseq_transcriptid": "RefSeq_TranscriptId",
-    "blatseq": "BlatSeq",
-    "targetseq": "TargetSeq",
-    "strand_probe": "Strand_Probe",
-    "probe_set_target_region": "Probe_set_target_region",
-    "probe_set_specificity": "Probe_set_specificity",
-    "probe_set_blat_score": "Probe_set_BLAT_score",
-    "probe_set_blat_mb_start": "Probe_set_Blat_Mb_start",
-    "probe_set_blat_mb_end": "Probe_set_Blat_Mb_end",
-    "probe_set_strand": "Probe_set_strand",
-    "probe_set_note_by_rw": "Probe_set_Note_by_RW",
-    "flag": "flag"
-}
-
 def fetch_trait(conn: DBConnection, dataset_id: int, trait_name: str) -> dict:
     """Fetch phenotype 'traits' by `dataset_id` and `trait_name`."""
     query = (