diff options
Diffstat (limited to 'gn3/computations')
| -rw-r--r-- | gn3/computations/gemma.py | 7 |
1 files changed, 2 insertions, 5 deletions
diff --git a/gn3/computations/gemma.py b/gn3/computations/gemma.py index 7ee70b0..7b5f91d 100644 --- a/gn3/computations/gemma.py +++ b/gn3/computations/gemma.py @@ -49,9 +49,7 @@ def do_paths_exist(paths: ValuesView) -> bool: def generate_gemma_computation_cmd( - gemma_cmd: str, - gemma_kwargs: Dict[str, str], - output_file: str, + gemma_cmd: str, gemma_kwargs: Dict[str, str], output_file: str, gemma_wrapper_kwargs: Dict[str, str]) -> Optional[str]: """Create a computation cmd""" geno_filename = gemma_kwargs.get("geno_filename", "") @@ -69,5 +67,4 @@ def generate_gemma_computation_cmd( return compose_gemma_cmd(gemma_wrapper_cmd=gemma_cmd, gemma_wrapper_kwargs=gemma_wrapper_kwargs, gemma_kwargs=_kwargs, - gemma_args=["-gk", ">", - output_file]) + gemma_args=["-gk", ">", output_file]) |