diff options
Diffstat (limited to 'gn3/computations')
| -rw-r--r-- | gn3/computations/partial_correlations.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/gn3/computations/partial_correlations.py b/gn3/computations/partial_correlations.py index 07c73db..9b15bcb 100644 --- a/gn3/computations/partial_correlations.py +++ b/gn3/computations/partial_correlations.py @@ -555,7 +555,7 @@ def trait_for_output(trait): } return {key: val for key, val in trait.items() if val is not None} -def check_for_common_errors( +def check_for_common_errors(# pylint: disable=[R0914] conn, primary_trait_name, control_trait_names, threshold): """Check for common errors""" corr_min_informative = 4 @@ -676,7 +676,7 @@ def partial_correlations_with_target_db(# pylint: disable=[R0913, R0914, R0911] check_res = check_for_common_errors( conn, primary_trait_name, control_trait_names, threshold) if check_res.get("status") == "error": - return error_check_results + return check_res primary_trait = check_res["primary_trait"] input_trait_geneid = primary_trait.get("geneid", 0) @@ -822,12 +822,12 @@ def partial_correlations_with_target_traits( check_res = check_for_common_errors( conn, primary_trait_name, control_trait_names, threshold) if check_res.get("status") == "error": - return error_check_results + return check_res target_traits = { trait["name"]: trait for trait in traits_info(conn, threshold, target_trait_names)} - target_traits_data = traits_data(conn, target_traits.values()) + target_traits_data = traits_data(conn, tuple(target_traits.values())) def __merge(trait, pcorrs): return { |