diff options
Diffstat (limited to 'gn3/computations/rqtl.py')
| -rw-r--r-- | gn3/computations/rqtl.py | 12 |
1 files changed, 6 insertions, 6 deletions
diff --git a/gn3/computations/rqtl.py b/gn3/computations/rqtl.py index b53efbd..589caa4 100644 --- a/gn3/computations/rqtl.py +++ b/gn3/computations/rqtl.py @@ -68,7 +68,7 @@ def process_rqtl_mapping(file_name: str) -> List: # Later I should probably redo this using csv.read to avoid the # awkwardness with removing quotes with [1:-1] - outdir = os.path.join(get_tmpdir(),"output") + outdir = os.path.join(get_tmpdir(),"gn3") if not os.path.isdir(outdir): os.mkdir(outdir) @@ -113,7 +113,7 @@ def pairscan_for_figure(file_name: str) -> Dict: figure_data = {} # Open the file with the actual results, written as a list of lists - outdir = os.path.join(get_tmpdir(),"output") + outdir = os.path.join(get_tmpdir(),"gn3") if not os.path.isdir(outdir): os.mkdir(outdir) @@ -132,7 +132,7 @@ def pairscan_for_figure(file_name: str) -> Dict: with open( os.path.join( current_app.config.get("TMPDIR", "/tmp"), - "output", + "gn3", "MAP_" + file_name, ), "r", @@ -163,7 +163,7 @@ def get_marker_list(map_file: str) -> List: marker_list = [] with open( os.path.join( - current_app.config.get("TMPDIR", "/tmp"), "output", map_file + current_app.config.get("TMPDIR", "/tmp"), "gn3", map_file ), "r", encoding="utf8", @@ -199,7 +199,7 @@ def generate_table_rows( table_data = [] with open( os.path.join( - current_app.config.get("TMPDIR", "/tmp"), "output", results_file + current_app.config.get("TMPDIR", "/tmp"), "gn3", results_file ), "r", encoding="utf8", @@ -318,7 +318,7 @@ def process_perm_output(file_name: str) -> Tuple[List, float, float]: suggestive and significant thresholds""" perm_results = [] - outdir = os.path.join(get_tmpdir(),"output") + outdir = os.path.join(get_tmpdir(),"gn3") if not os.path.isdir(outdir): os.mkdir(outdir) |