diff options
Diffstat (limited to 'gn3/computations/partial_correlations.py')
| -rw-r--r-- | gn3/computations/partial_correlations.py | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/gn3/computations/partial_correlations.py b/gn3/computations/partial_correlations.py index 6eee299..88c6f3b 100644 --- a/gn3/computations/partial_correlations.py +++ b/gn3/computations/partial_correlations.py @@ -209,7 +209,7 @@ def good_dataset_samples_indexes( samples_from_file.index(good) for good in set(samples).intersection(set(samples_from_file)))) -def partial_correlations_fast(# pylint: disable=[R0913, R0914] +def partial_correlations_fast(# pylint: disable=[R0913, R0914, too-many-positional-arguments] samples, primary_vals, control_vals, database_filename, fetched_correlations, method: str, correlation_type: str) -> Generator: """ @@ -334,7 +334,7 @@ def compute_partial( This implementation reworks the child function `compute_partial` which will then be used in the place of `determinPartialsByR`. """ - with Pool(processes=(cpu_count() - 1)) as pool: + with Pool(processes=cpu_count() - 1) as pool: return ( result for result in ( pool.starmap( @@ -345,7 +345,7 @@ def compute_partial( for target in targets))) if result is not None) -def partial_correlations_normal(# pylint: disable=R0913 +def partial_correlations_normal(# pylint: disable=[R0913, too-many-positional-arguments] primary_vals, control_vals, input_trait_gene_id, trait_database, data_start_pos: int, db_type: str, method: str) -> Generator: """ @@ -381,7 +381,7 @@ def partial_correlations_normal(# pylint: disable=R0913 return all_correlations -def partial_corrs(# pylint: disable=[R0913] +def partial_corrs(# pylint: disable=[R0913, too-many-positional-arguments] conn, samples, primary_vals, control_vals, return_number, species, input_trait_geneid, input_trait_symbol, tissue_probeset_freeze_id, method, dataset, database_filename): @@ -667,7 +667,7 @@ def check_for_common_errors(# pylint: disable=[R0914] return non_error_result -def partial_correlations_with_target_db(# pylint: disable=[R0913, R0914, R0911] +def partial_correlations_with_target_db(# pylint: disable=[R0913, R0914, R0911 too-many-positional-arguments] conn: Any, primary_trait_name: str, control_trait_names: Tuple[str, ...], method: str, criteria: int, target_db_name: str) -> dict: |