diff options
Diffstat (limited to 'gn3/computations/ctl.py')
| -rw-r--r-- | gn3/computations/ctl.py | 8 |
1 files changed, 3 insertions, 5 deletions
diff --git a/gn3/computations/ctl.py b/gn3/computations/ctl.py index f881410..5c004ea 100644 --- a/gn3/computations/ctl.py +++ b/gn3/computations/ctl.py @@ -6,13 +6,11 @@ from gn3.computations.wgcna import dump_wgcna_data from gn3.computations.wgcna import compose_wgcna_cmd from gn3.computations.wgcna import process_image -from gn3.settings import TMPDIR - -def call_ctl_script(data): +def call_ctl_script(data, tmpdir): """function to call ctl script""" - data["imgDir"] = TMPDIR - temp_file_name = dump_wgcna_data(data) + data["imgDir"] = tmpdir + temp_file_name = dump_wgcna_data(data, tmpdir) cmd = compose_wgcna_cmd("ctl_analysis.R", temp_file_name) cmd_results = run_cmd(cmd) |